Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32730 254 / 9e-83 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040132 [exp] 640 / 0 AT1G32730 243 / 2e-78 unknown protein Lus10000258 [exp] 234 / 9e-76 AT1G32730 140 / 6e-40 unknown protein Lus10011037 [exp] 227 / 5e-73 AT1G32730 132 / 2e-36 unknown protein Lus10003008 [exp] 103 / 2e-27 AT1G32730 86 / 1e-21 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G085901 [exp] 335 / 7e-114 AT1G32730 325 / 3e-110 unknown protein Potri.001G148500 [exp] 329 / 1e-111 AT1G32730 315 / 5e-106 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05142 [flax] [poplar] DUF702 Domain of unknown function (DUF702)
Representative CDS sequence Show only first row Show all	>Lus10001085 pacid=23148931 polypeptide=Lus10001085 locus=Lus10001085.g ID=Lus10001085.BGIv1.0 annot-version=v1.0 ATGGCAACATCCTCGCCGGCGCCTAGCAACATTATCTCCGATGCCGCTGCCAACCCCGCCACGCCGGCCTCTTTACAGCGTATCGACGGAACGACACCTA AAACCCTCCGCGGCCTCAATAAACCCAAGTGTATTCAGTGCGGAAACGTCGCTCGATCCAGGTGCCCGTATCAATCCTGCAAAAGTTGCTGCTCAAAAGC CCAAAATCCATGTCATATTCATGTTCTAAAAGCAAATGCAACCATTCCAGACAAGGCGTTGCCTTCAAATATTGGTCAGGTTGATCACCAATCAGTTGAT TTGTCTCCTTCCACAACTTCCCTTCGCGTTGCATCACTTCGGCAACTCTCCAACACTTTTTCCCAATTCAACAACGTGCACACTCCGCGTTGGAGAAAGC CACTTACCAAAAAGGAAGCTTTGGCCATCAACGAATGGAGATTTAAAAAGTTGAAGGAATATAGGGACGGAATTGCTGAAAAGGAAACTGAAGCTTTTGA TCGGTACATGCAAAACATCAGCTTGCTAGAGGAGACATTCTCGATGAAGTCCATGCAAGGTAACGACGATGCTTCGCTCGTGGATCCTACGGTCAGCGAG AATCTCAGGAAGAAGAAACAACGGGTTGTCGATGAAGGACTTCGGAAGCTCGAGGAAATGGAGCTCGAAGGCGATAGAAGACCAGCAAAGGTGAAGCAGT GGTCTGATAGGGCTTCAACTTTCAATGATCTCATCGAGAAGTTGAATAAAGCACGAAACGAGGATGACATTAAGTCTTGTCTGGAGATGAAGTCCCAGCT CTCCGGAAGTCGTGGCCCACAAGAAGCCGCTGTTTTAAACAACGAGGTTGAGTCACAGACGAACAAGAATGAACAGGAGGCGTCCTCCAGTAAGGCTATG GATTGGTTCTCTCAGAACCAACTTAGGCCAGTAGATATTGATCAGGAAACTGTTGGCAAGATCAACGCACATTTTACTTCCCTGAAGATAGCAAGTTTAT GA
AA sequence Show only first row Show all	>Lus10001085 pacid=23148931 polypeptide=Lus10001085 locus=Lus10001085.g ID=Lus10001085.BGIv1.0 annot-version=v1.0 MATSSPAPSNIISDAAANPATPASLQRIDGTTPKTLRGLNKPKCIQCGNVARSRCPYQSCKSCCSKAQNPCHIHVLKANATIPDKALPSNIGQVDHQSVD LSPSTTSLRVASLRQLSNTFSQFNNVHTPRWRKPLTKKEALAINEWRFKKLKEYRDGIAEKETEAFDRYMQNISLLEETFSMKSMQGNDDASLVDPTVSE NLRKKKQRVVDEGLRKLEEMELEGDRRPAKVKQWSDRASTFNDLIEKLNKARNEDDIKSCLEMKSQLSGSRGPQEAAVLNNEVESQTNKNEQEASSSKAM DWFSQNQLRPVDIDQETVGKINAHFTSLKIASL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G32730			unknown protein		Lus10001085 [exp]	0	1
AT3G44750		HDT1, HDA3, ATH...	HISTONE DEACETYLASE 2A, histon...		Lus10003376 [exp]	6.7	0.8279
AT5G46920			Intron maturase, type II famil...		Lus10003019 [exp]	9.2	0.7851
AT5G27650			Tudor/PWWP/MBT superfamily pro...		Lus10043114 [exp]	11.2	0.8178
AT5G44560		VPS2.2	SNF7 family protein (.1.2)		Lus10038407 [exp]	12.5	0.7952
AT3G15790		MBD11, ATMBD11	methyl-CPG-binding domain 11 (...		Lus10030108 [exp]	12.6	0.8321
AT5G64320			Pentatricopeptide repeat (PPR)...		Lus10038804 [exp]	14.4	0.8016
AT5G61190	C2H2ZnF		putative endonuclease or glyco...		Lus10003476 [exp]	15.3	0.8369
AT1G05970			RNA-binding (RRM/RBD/RNP motif...		Lus10017690 [exp]	19.0	0.7617
AT3G07590			Small nuclear ribonucleoprotei...		Lus10016068 [exp]	23.7	0.7926
AT5G08180			Ribosomal protein L7Ae/L30e/S1...		Lus10004366 [exp]	27.2	0.8033

Compare expression of checked genes

Lus10001085 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.