Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17100 503 / 2e-177 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040133 [exp] 847 / 0 AT4G17100 522 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G085600 [exp] 576 / 0 AT4G17100 506 / 1e-178 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0695 [flax] [poplar] EndoU PF09412 [flax] [poplar] XendoU Endoribonuclease XendoU
Representative CDS sequence Show only first row Show all	>Lus10001086 pacid=23148934 polypeptide=Lus10001086 locus=Lus10001086.g ID=Lus10001086.BGIv1.0 annot-version=v1.0 ATGGACGGCTTGATCAGAGGTCTGGCGGACGTCGTTCTTGGCCACGACGGCAAAGATGAACGCGATGAACAACGACCGAGATCCAGCTGGGCCGAGGTCG TCTCAGGTGACAATGACGATCAGGATTTTGGCGAAAGCCATCCCGGCCGCAGGCAGCCGCCACATCACTCTGCTGCAGAGCAAGATCGGAGGCGAGGAAC AAGACGTGAGGAGTCGGAGATTGCAGATTCAAATTATTCAAGGCGGCCTCAAAAGGCTGCCTTTCAAGGACACGGAACTGATGACTACCAGAAAAATCAG TGGGCTAGAGAGGAAGCATCAGAGAACAGTAATGATGGATGGGAGACGGTGGGCAAAAAGCATCCCAAACAGCCACATAAGGTCGTGAAGGATAACTGGA ATGGATACAAACAAGCTGCATCGGAGCAAGAATACTCTGCAGAGTTTGAAGACAGTGAGGCGTTAGAGCCTTCAGAACAGGAGCTTTCTGACCTGTCATG TGCTTGCAACAAATTGTGGGAACTAGATGCAAACCGGTTGGTTCCTGAAAGGGACTATCAGATTGACTGTGGCGAAGGGAAGAAAGTCTATCAGAAGGAT GACATGGCTGAAGGAAGCCTATTTTGCTGGCTGAGTGAAGATGTATTCAGAAAGCCTACGTATTCTCGTTTCTGCTCTCTTCTCGATAACTACAACCCCA ATGAAGGCAGTAAAGAGGTTGTTACATCGGAGGAGAAGCAAGAGCAGGCTGCTTTTGTTGAAGAAATCAGCAGAACTGCGCCTATTAAATACCTTCACAA GTATCTTGCAGCTAAGGGTATTGTATCAGGAAATCGTGAAGATTTTAAAAGGTGTATGTCCAGCCTATGGTTCGATCTTTACAGTCGAGGTGGAACATAT GGTTCCTCTTCTGCTTTTGAGCATGTGTTTGTGGGAGAAATCAAGCAGCGTGGGGAACAAGAAGTTTCTGGCTTCCACAACTGGCTTCAGTTCTATCTGG AGGAAGCCAAGGGGAATGTAAATTACCAAGGGTATATATTTCCTCGCCGACGTGGTCAGATTCCGGACTCCGAAAGCCAGTTGCTAACGATTCAGTTTGA ATGGAACGGAGTCATGAAGGCCGTTTCCAGCACTATGATTGGAGTTAGCCCAGAATTTGAGATGGCTCTCTACACCTTGTGCTTCTATGCCGGGGGAGAA GAGAATCACGTGGAGTTGGGTCCTTATTCCGTGAACATCAAATGCTACCGTATGGGCAACAGACTCGGGTCTGCGTTCCCCATGGGTTGA
AA sequence Show only first row Show all	>Lus10001086 pacid=23148934 polypeptide=Lus10001086 locus=Lus10001086.g ID=Lus10001086.BGIv1.0 annot-version=v1.0 MDGLIRGLADVVLGHDGKDERDEQRPRSSWAEVVSGDNDDQDFGESHPGRRQPPHHSAAEQDRRRGTRREESEIADSNYSRRPQKAAFQGHGTDDYQKNQ WAREEASENSNDGWETVGKKHPKQPHKVVKDNWNGYKQAASEQEYSAEFEDSEALEPSEQELSDLSCACNKLWELDANRLVPERDYQIDCGEGKKVYQKD DMAEGSLFCWLSEDVFRKPTYSRFCSLLDNYNPNEGSKEVVTSEEKQEQAAFVEEISRTAPIKYLHKYLAAKGIVSGNREDFKRCMSSLWFDLYSRGGTY GSSSAFEHVFVGEIKQRGEQEVSGFHNWLQFYLEEAKGNVNYQGYIFPRRRGQIPDSESQLLTIQFEWNGVMKAVSSTMIGVSPEFEMALYTLCFYAGGE ENHVELGPYSVNIKCYRMGNRLGSAFPMG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17100			unknown protein		Lus10001086 [exp]	0	1
AT1G33490			unknown protein		Lus10039157 [exp]	1.0	0.8942
AT3G46010		ATADF1, ADF1	actin depolymerizing factor 1 ...		Lus10024417 [exp]	5.3	0.8277
AT2G47180		ATGOLS1	galactinol synthase 1 (.1)		Lus10013020 [exp]	8.1	0.7952
AT3G12800		SDRB, DECR	short-chain dehydrogenase-redu...		Lus10031746 [exp]	10.2	0.8077
AT5G49890		ATCLC-C, CLC-C	chloride channel C (.1)		Lus10024466 [exp]	10.6	0.7666
AT5G52990			SNARE-like superfamily protein...		Lus10022397 [exp]	10.6	0.7856
AT1G01630			Sec14p-like phosphatidylinosit...		Lus10022428 [exp]	10.7	0.7894
AT1G65320			Cystathionine beta-synthase (C...		Lus10037535 [exp]	10.8	0.8074
AT1G12390			Cornichon family protein (.1)		Lus10028906 [exp]	16.2	0.7724
AT3G17000		UBC32	ubiquitin-conjugating enzyme 3...		Lus10037759 [exp]	20.0	0.7892

Compare expression of checked genes

Lus10001086 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.