Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17090 766 / 0 CT-BMY, BMY8, BAM3 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) AT3G23920 588 / 0 BAM1, BMY7, TR-BAMY BETA-AMYLASE 7, beta-amylase 1 (.1) AT4G15210 438 / 3e-149 BAM5, AT-BETA-AMY, BMY1, RAM1, ATBETA-AMY REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2) AT4G00490 424 / 5e-143 BAM2, BMY9 BETA-AMYLASE 9, beta-amylase 2 (.1) AT2G32290 425 / 6e-143 BAM6, BMY5 BETA-AMYLASE 5, beta-amylase 6 (.1) AT5G55700 395 / 3e-132 BAM4, BMY6 BETA-AMYLASE 6, beta-amylase 4 (.1.2) AT2G45880 374 / 5e-122 BZR BAM7, BMY4 BETA-AMYLASE 4, beta-amylase 7 (.1) AT5G45300 324 / 9e-103 BZR BAM8, BMY2 BETA-AMYLASE 8, beta-amylase 2 (.1.2) AT5G18670 295 / 3e-93 BAM9, BMY3 BETA-AMYLASE 9, beta-amylase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040134 [exp] 957 / 0 AT4G17090 735 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Lus10011035 [exp] 794 / 0 AT4G17090 778 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Lus10003005 [exp] 719 / 0 AT4G17090 709 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Lus10004396 [exp] 588 / 0 AT3G23920 848 / 0.0 BETA-AMYLASE 7, beta-amylase 1 (.1) Lus10023700 [exp] 567 / 0 AT3G23920 783 / 0.0 BETA-AMYLASE 7, beta-amylase 1 (.1) Lus10004398 [exp] 457 / 2e-156 AT3G23920 649 / 0.0 BETA-AMYLASE 7, beta-amylase 1 (.1) Lus10039701 [exp] 446 / 2e-150 AT4G15210 724 / 0.0 REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2) Lus10018491 [exp] 431 / 3e-145 AT4G15210 697 / 0.0 REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2) Lus10039702 [exp] 424 / 2e-143 AT4G15210 694 / 0.0 REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G148900 [exp] 815 / 0 AT4G17090 885 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Potri.003G085500 [exp] 794 / 0 AT4G17090 868 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Potri.010G062900 [exp] 610 / 0 AT3G23920 908 / 0.0 BETA-AMYLASE 7, beta-amylase 1 (.1) Potri.008G174100 [exp] 603 / 0 AT3G23920 876 / 0.0 BETA-AMYLASE 7, beta-amylase 1 (.1) Potri.017G040800 [exp] 435 / 8e-147 AT4G15210 764 / 0.0 REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2) Potri.014G083800 [exp] 428 / 7e-145 AT4G00490 799 / 0.0 BETA-AMYLASE 9, beta-amylase 2 (.1) Potri.003G143500 [exp] 429 / 2e-144 AT3G23920 442 / 4e-149 BETA-AMYLASE 7, beta-amylase 1 (.1) Potri.001G087600 [exp] 416 / 5e-140 AT3G23920 459 / 3e-156 BETA-AMYLASE 7, beta-amylase 1 (.1) Potri.014G083700 [exp] 407 / 8e-135 AT2G45880 863 / 0.0 BETA-AMYLASE 4, beta-amylase 7 (.1) Potri.002G159300 [exp] 401 / 3e-132 AT2G45880 858 / 0.0 BETA-AMYLASE 4, beta-amylase 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF01373 [flax] [poplar] Glyco_hydro_14 Glycosyl hydrolase family 14
Representative CDS sequence Show only first row Show all	>Lus10001087 pacid=23148930 polypeptide=Lus10001087 locus=Lus10001087.g ID=Lus10001087.BGIv1.0 annot-version=v1.0 ATGGCTCTTACACTAAGGTCATCCACATCCTTCATCAACCTAAATGACTACTCCTCCCTCAACAACAACAACAACAACAACACCAACATCATCAGATCCT CAATCTCCTTCAAGCCAACAAGTTTATGTTCAATCCAAGCGATGTCGTCGAGCCATGTGCTGCTAGAACAACAACCCCACAAATCAGTTGAGAGACTTCA TGACCAAACTTTGTCAGGCTCTCATCATCATGACATCAGCAGCAGCAGTAGTTCGAATGGGTTGTTGTCGTCGTCCAAGGTGCCTGTTTTTGTGATGCTG CCTCTGGACACGGTGACCCACGGAGGGAACCTGAACAAGCCACGGGCTATGAACGCTAGCTTGTTGGCTCTGAAGAGAGCCGGAGTGGAAGGGGTGATGG TGGACGCTTGGTGGGGGTTGGTTGAGAAAGATGGACCTCTGAGATATAACTGGGAAGGCTATGCTGAGCTTGTGGAGATGGTTAAGCACCATGGCTTGAA GCTTCAGGTTGTCATGTCCTTTCATCAGTGTGGTGGCAACGTTGGTGATTCTTGCAGCATTCCTCTGCCTCCATGGGTGCTTGAAGAGATCAGCAAGAAC CCAGACCTAGTGTACACAGACAGATCAGGTCGCAGAAATCCAGAATACATCTCCTTAGGCTGTGACTCCTTGGCTGTTCTAAGAGGAAGAACACCAATCC AAGTCTACTCAGATTACATGAGAAGCTTCCGTGACAGATTCGCAGATTACCTTGGAGACGTTATTGTGGAAATCCAAGTAGGAATGGGTCCTTGTGGAGA ACTGAGATACCCAGCATACCCAGAAAGCAATGGCACTTGGAACTTCCCAGGAATTGGTGAATTCCAATGTTATGACAAGTACATGAGAGCATCACTAAAA GCATCAGCAGAGGAACAAAAGAAGAAAGAATGGGGCCAAGGAGGGCCACACGATTCAGGGCAATACAACCAGTACCCTGAAGACACAGGCTTCTTCAAAA GAGAAGGCACATGGAAAACAGAATACGGCCACTTCTTCCTACAATGGTACTCATCAAAGCTTCTCCAACACGGTAACACAATCTTATCATCAGCAAAGTC CATCTTCAAAGGAACTGGAGCCAAGCTGTCCGGCAAAGTCGCAGGCATCCACTGGCACTACAGGACAAGGTCCCACGCAGCCGAACTCACAGCCGGATAC TACAACACCAGACACCACGACGGGTACTTGCCTCTGGCGAAGATGTTCAGCAAGCACGGAGCGGTGTTGAACTTCACGTGCATGGAAATGAGAGACGGGG AGCAGCCCGAGAATGGGAGCTGCTCACCAGAAGGTCTGGTGAAGCAGGTGAAGATGGCGACGAAAGCTGCTGGGACAGAACTTGCTGGGGAGAATGCTTT GGAGAGGTATGATCTGGCTGCTTATAGACAGGTGGTGTCGACGAGTGGTGGTGGATTGGCTGCGTTTACCTACTTGAGGTTGAATAAGAGGCTGTTTGAG GAAGGGAACTGGAGGAACTTGGTTGAGTTTGTGAAGAACATGTCGGAGAGTGGAAGGAATTGTAATAAGGAGTTGCCGGAGTGTGATACTGGAAGGAGTG ATTTGTATGTTGGTTTTGTGAAGGGGAAGAGTGTTAGGAAGGATAGTAAGGAGATACTGCTTGTGTAG
AA sequence Show only first row Show all	>Lus10001087 pacid=23148930 polypeptide=Lus10001087 locus=Lus10001087.g ID=Lus10001087.BGIv1.0 annot-version=v1.0 MALTLRSSTSFINLNDYSSLNNNNNNNTNIIRSSISFKPTSLCSIQAMSSSHVLLEQQPHKSVERLHDQTLSGSHHHDISSSSSSNGLLSSSKVPVFVML PLDTVTHGGNLNKPRAMNASLLALKRAGVEGVMVDAWWGLVEKDGPLRYNWEGYAELVEMVKHHGLKLQVVMSFHQCGGNVGDSCSIPLPPWVLEEISKN PDLVYTDRSGRRNPEYISLGCDSLAVLRGRTPIQVYSDYMRSFRDRFADYLGDVIVEIQVGMGPCGELRYPAYPESNGTWNFPGIGEFQCYDKYMRASLK ASAEEQKKKEWGQGGPHDSGQYNQYPEDTGFFKREGTWKTEYGHFFLQWYSSKLLQHGNTILSSAKSIFKGTGAKLSGKVAGIHWHYRTRSHAAELTAGY YNTRHHDGYLPLAKMFSKHGAVLNFTCMEMRDGEQPENGSCSPEGLVKQVKMATKAAGTELAGENALERYDLAAYRQVVSTSGGGLAAFTYLRLNKRLFE EGNWRNLVEFVKNMSESGRNCNKELPECDTGRSDLYVGFVKGKSVRKDSKEILLV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17090		CT-BMY, BMY8, B...	BETA-AMYLASE 8, BETA-AMYLASE 3...		Lus10001087 [exp]	0	1
AT1G30820			CTP synthase family protein (....		Lus10001218 [exp]	2.0	0.8652
AT1G29660			GDSL-like Lipase/Acylhydrolase...		Lus10032316 [exp]	2.6	0.9006
AT1G30820			CTP synthase family protein (....		Lus10038403 [exp]	4.5	0.8456
AT1G77020			DNAJ heat shock N-terminal dom...		Lus10042774 [exp]	6.2	0.7964
AT3G24330			O-Glycosyl hydrolases family 1...		Lus10033082 [exp]	6.3	0.8424
AT1G72880			Survival protein SurE-like pho...		Lus10008390 [exp]	6.9	0.8313
					Lus10015658 [exp]	7.5	0.8542
AT5G07170			Cell cycle regulated microtubu...		Lus10031109 [exp]	9.0	0.7641
AT2G40070			unknown protein		Lus10002493 [exp]	10.0	0.7240
AT3G24330			O-Glycosyl hydrolases family 1...		Lus10017740 [exp]	11.3	0.8183

Compare expression of checked genes

Lus10001087 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.