Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47070 453 / 4e-159 Protein kinase superfamily protein (.1) AT4G17660 414 / 3e-144 Protein kinase superfamily protein (.1) AT2G28940 373 / 6e-127 Protein kinase superfamily protein (.1.2) AT3G09830 355 / 1e-120 Protein kinase superfamily protein (.1.2) AT5G03320 347 / 3e-117 Protein kinase superfamily protein (.1) AT2G39110 336 / 6e-113 Protein kinase superfamily protein (.1) AT3G28690 329 / 5e-111 Protein kinase superfamily protein (.1.2.3) AT1G07570 328 / 4e-110 APK1A Protein kinase superfamily protein (.1.2.3) AT2G28930 326 / 2e-109 APK1B protein kinase 1B (.1.2.3) AT5G02290 322 / 6e-108 NAK Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040135 [exp] 719 / 0 AT5G47070 456 / 3e-160 Protein kinase superfamily protein (.1) Lus10016536 [exp] 360 / 8e-122 AT2G28940 576 / 0.0 Protein kinase superfamily protein (.1.2) Lus10038711 [exp] 360 / 1e-121 AT3G09830 547 / 0.0 Protein kinase superfamily protein (.1.2) Lus10037980 [exp] 355 / 1e-119 AT3G09830 544 / 0.0 Protein kinase superfamily protein (.1.2) Lus10040804 [exp] 346 / 2e-116 AT2G28940 578 / 0.0 Protein kinase superfamily protein (.1.2) Lus10030668 [exp] 337 / 2e-112 AT5G15080 723 / 0.0 Protein kinase superfamily protein (.1) Lus10005255 [exp] 337 / 3e-112 AT5G15080 720 / 0.0 Protein kinase superfamily protein (.1) Lus10023794 [exp] 330 / 2e-111 AT5G02290 543 / 0.0 Protein kinase superfamily protein (.1.2) Lus10038087 [exp] 332 / 3e-111 AT5G15080 499 / 6e-175 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G149100 [exp] 536 / 0 AT5G47070 496 / 7e-176 Protein kinase superfamily protein (.1) Potri.003G085300 [exp] 509 / 0 AT5G47070 472 / 6e-166 Protein kinase superfamily protein (.1) Potri.014G052700 [exp] 484 / 3e-171 AT5G47070 431 / 2e-149 Protein kinase superfamily protein (.1) Potri.009G031500 [exp] 385 / 7e-132 AT2G28940 565 / 0.0 Protein kinase superfamily protein (.1.2) Potri.001G240500 [exp] 374 / 1e-127 AT2G28940 563 / 0.0 Protein kinase superfamily protein (.1.2) Potri.008G036800 [exp] 361 / 1e-122 AT3G09830 537 / 0.0 Protein kinase superfamily protein (.1.2) Potri.010G225300 [exp] 359 / 6e-122 AT2G39110 538 / 0.0 Protein kinase superfamily protein (.1) Potri.006G126000 [exp] 356 / 2e-120 AT3G09830 587 / 0.0 Protein kinase superfamily protein (.1.2) Potri.006G066100 [exp] 337 / 2e-113 AT5G15080 503 / 6e-177 Protein kinase superfamily protein (.1) Potri.001G240400 [exp] 336 / 3e-113 AT1G07570 590 / 0.0 Protein kinase superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10001088 pacid=23148921 polypeptide=Lus10001088 locus=Lus10001088.g ID=Lus10001088.BGIv1.0 annot-version=v1.0 ATGAAGTGCTTCCCCAAAATCTTCAGGGGGAAATCGGGTTCTACCTCAGCTCCCCAGGCGCCGTCGTCATCGTCAGACGGGAACAATAAGTCGGCGGCTG TGGTGCGTAGTACGAGATCTTTGCCGTCTCCGAGGACCATACAGGATCTTTACAAGGAGAAAGAGCAGAATTTGAGGGTATTCTCCATCAAGGAGCTTAA AGATGCCACCAATGGCTTCAATCGGTTGCTGAAGATTGGGGAAGGTGGGTTTGGGAGTGTCTACAAAGGCTCAGTTTTTGCAGCTACTACTGATTCTATT TCTTCTTCTGATGGTGGTGAACGGTTGGTTGTTGCCATCAAGAAGCTCAACAAGCATGGCTTGCAGGGTCATAAGCAATGGGTTGCAGAGGTTCAGTTTC TAGGAATAGTGAACCATCCAAACCTAGTGAAGCTGCTGGGCTACTGCTCGGTAGACGACGAAAGAGGGATTCAACGGTTGTTGGTGTACGAGTACATGCC TAACAAGAGTTTAGAGGATCATCTCTTCAACAGAGGTCTACCTGTATTGCCATGGAGGAAACGACTAGAGATCATGCTTGGTGCTGCTCAAGGCCTGGCT TACCTACACTGCGGACTTGAAGTACCTGTGATCTATAGAGATTTCAAATGCTCGAATATACTACTGGATGTGGGGTTTAATCCCAAGCTCTCTGATTTCG GGCTGGCTAGAGAAGGACCAACTGGCGATCACACTCATGTGTCAACCGGGGTAGTTGGAACACATGGGTACGCAGCTCCGGAGTACATCGAGACAGGACA CCTCACAATCCACAGCGACCTGTGGAGTTTCGGGGTGGTCCTGTACGAAATCCTGACAGGAAGACGGTCTCTGGAGCTAAATCGGCCAACTTCGGAACAA AAGCTACTGAATTGGGTGAAGCAGTTCCCAGCTGACAGCAAGAAGTTGTGCATGATCATAGACCCACGCCTAAGAAACGGCTGCTCCATGACTTCAGCAA GGAGAGTCGCAAAGCTGGCAGACGAGTGCTTGAACAAGAACGCCAAAGACCGGCCGTCAATGGGAAAAGTGGTGGAGGTCTTGAAGCTTGCAATACAAGA CACAGAGGAGCCTGCAAATGGCACAACCAAATGA
AA sequence Show only first row Show all	>Lus10001088 pacid=23148921 polypeptide=Lus10001088 locus=Lus10001088.g ID=Lus10001088.BGIv1.0 annot-version=v1.0 MKCFPKIFRGKSGSTSAPQAPSSSSDGNNKSAAVVRSTRSLPSPRTIQDLYKEKEQNLRVFSIKELKDATNGFNRLLKIGEGGFGSVYKGSVFAATTDSI SSSDGGERLVVAIKKLNKHGLQGHKQWVAEVQFLGIVNHPNLVKLLGYCSVDDERGIQRLLVYEYMPNKSLEDHLFNRGLPVLPWRKRLEIMLGAAQGLA YLHCGLEVPVIYRDFKCSNILLDVGFNPKLSDFGLAREGPTGDHTHVSTGVVGTHGYAAPEYIETGHLTIHSDLWSFGVVLYEILTGRRSLELNRPTSEQ KLLNWVKQFPADSKKLCMIIDPRLRNGCSMTSARRVAKLADECLNKNAKDRPSMGKVVEVLKLAIQDTEEPANGTTK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47070			Protein kinase superfamily pro...		Lus10001088 [exp]	0	1
AT4G33920			Protein phosphatase 2C family ...		Lus10002110 [exp]	3.2	0.9147
AT1G01550		BPS1	BYPASS 1, Protein of unknown f...		Lus10039581 [exp]	3.9	0.8957
AT4G33920			Protein phosphatase 2C family ...		Lus10013896 [exp]	6.5	0.9132
AT2G24240			BTB/POZ domain with WD40/YVTN ...		Lus10021855 [exp]	6.6	0.8422
AT2G32260		ATCCT1	phosphorylcholine cytidylyltra...		Lus10027337 [exp]	6.9	0.8905
					Lus10022031 [exp]	7.5	0.8841
AT5G58380		PKS2, CIPK10, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10022749 [exp]	7.9	0.8846
AT5G39670			Calcium-binding EF-hand family...		Lus10042369 [exp]	8.4	0.8909
AT2G23780			RING/U-box superfamily protein...		Lus10016796 [exp]	10.4	0.8835
AT3G52190		AtPHF1, PHF1	phosphate transporter traffic ...		Lus10028830 [exp]	11.6	0.8733

Compare expression of checked genes

Lus10001088 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.