Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05490 201 / 8e-59 CHR31 chromatin remodeling 31 (.1) AT3G24340 181 / 1e-51 CHR40 chromatin remodeling 40 (.1) AT5G20420 108 / 2e-26 CHR42 chromatin remodeling 42 (.1) AT3G42670 108 / 2e-26 CLSY1, CLSY, CHR38 CLASSY 1, CLASSY1, chromatin remodeling 38 (.1) AT2G16390 105 / 2e-25 DMS1, CHR35, DRD1 DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1, DEFECTIVE IN MERISTEM SILENCING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) AT2G21450 98 / 8e-23 CHR34 chromatin remodeling 34 (.1) AT3G32330 77 / 6e-16 DNA repair protein-related (.1) AT1G08600 67 / 1e-12 ATRX, CHR20 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4) AT3G32280 61 / 3e-10 ATP-dependent helicase family protein (.1) AT3G31900 55 / 2e-08 ATP-dependent helicase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040136 [exp] 491 / 1e-168 AT1G05490 430 / 2e-131 chromatin remodeling 31 (.1) Lus10003003 [exp] 344 / 5e-111 AT1G05490 579 / 0.0 chromatin remodeling 31 (.1) Lus10011033 [exp] 348 / 7e-111 AT1G05490 590 / 0.0 chromatin remodeling 31 (.1) Lus10009840 [exp] 114 / 1e-28 AT5G20420 1283 / 0.0 chromatin remodeling 42 (.1) Lus10041963 [exp] 113 / 5e-28 AT2G16390 1018 / 0.0 DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1, DEFECTIVE IN MERISTEM SILENCING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) Lus10017973 [exp] 112 / 6e-28 AT2G16390 994 / 0.0 DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1, DEFECTIVE IN MERISTEM SILENCING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) Lus10040956 [exp] 110 / 5e-27 AT5G20420 1316 / 0.0 chromatin remodeling 42 (.1) Lus10042070 [exp] 107 / 6e-26 AT2G16390 833 / 0.0 DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1, DEFECTIVE IN MERISTEM SILENCING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) Lus10032785 [exp] 61 / 3e-10 AT1G08600 1252 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G050200 [exp] 256 / 3e-78 AT1G05490 592 / 0.0 chromatin remodeling 31 (.1) Potri.008G073500 [exp] 117 / 1e-29 AT3G42670 1120 / 0.0 CLASSY 1, CLASSY1, chromatin remodeling 38 (.1) Potri.009G120700 [exp] 113 / 3e-28 AT2G16390 938 / 0.0 DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1, DEFECTIVE IN MERISTEM SILENCING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) Potri.010G183832 [exp] 109 / 2e-27 AT3G42670 656 / 0.0 CLASSY 1, CLASSY1, chromatin remodeling 38 (.1) Potri.004G159000 [exp] 94 / 1e-21 AT2G16390 811 / 0.0 DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1, DEFECTIVE IN MERISTEM SILENCING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) Potri.013G048500 [exp] 62 / 7e-11 AT1G08600 1603 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4) Potri.019G021500 [exp] 61 / 2e-10 AT1G08600 1612 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4) Potri.004G141500 [exp] 52 / 2e-07 AT3G19210 1259 / 0.0 homolog of RAD54 (.1.2) Potri.003G110100 [exp] 50 / 1e-06 AT5G44800 1988 / 0.0 PICKLE RELATED 1, chromatin remodeling 4 (.1) Potri.013G068400 [exp] 50 / 1e-06 AT3G54280 2717 / 0.0 ROOT GROWTH DEFECTIVE 3, DNA binding;ATP binding;nucleic acid binding;binding;helicases;ATP binding;DNA binding;helicases (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00176 [flax] [poplar] SNF2_N SNF2 family N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10001090 pacid=23148932 polypeptide=Lus10001090 locus=Lus10001090.g ID=Lus10001090.BGIv1.0 annot-version=v1.0 ATGAAGCTTTTTCCTCACTGCAGACCAGTCATAATCGTCCCTTGCAGTATGCTACTATCTTGGGAAGCCGAGTTCGAGGCCTTGGGAGTCGACATTCCTC GTCACTATCTGAATGATCCAAAGCTATCTGGCAAAAAGAGTGTCGCAGCTACAAAGTTGTTGGACGATCACAGGAGTTTACAAGCTGTCAGGTGGGTGAA GCTATATTCCTGGCAAAAGGAGTATGGTATTTTGGTATTAAGCTACAAGCTTTTTGAAGAACTTGTTGGCAAAGGGATGAGAAAGAAGAGGAAAACCGAA AGCAGAAAACAAAAGGGAAGGTCTGTAGATGAAAGAATAAAGGACGTCCTGCTTGATGTTCCTGGCTTGTTGGTATTTGATGAAGGCCATACAGCTCGCA ATAACAGTAGCCTCATCTGGAGAGCTTTGTCCAAAGTAAAAACAGAGAAGCGGGTTGTTCTTTCGGGGACTCCATTTCAAAACAATTTTGTAGAGTTCTT CAATACTCTCTGGATGGCAAGACCTAACTTTGTAGACAACATATCATCCAGCACATTTGAAACATCTCATAGAAAACGTGGTCGCAGGGCGGTGAATGAA GCCACGGAGAAATGGCAGTCTTTGACGAGTTATCTCGGCAAAGATACTGATGATTGGCTAAAAGTCATGAAACTGCAAGAGCTTAGAGATGGGATCAGCC CCTTTGTGCATGTCTACAAGGGCAATATACTCCAAGAAAAGCTCCCAGGTTTAAGAGACTCTGTGGTTATTTTACAGCCAGGCCCTTTCCCGGGATGA
AA sequence Show only first row Show all	>Lus10001090 pacid=23148932 polypeptide=Lus10001090 locus=Lus10001090.g ID=Lus10001090.BGIv1.0 annot-version=v1.0 MKLFPHCRPVIIVPCSMLLSWEAEFEALGVDIPRHYLNDPKLSGKKSVAATKLLDDHRSLQAVRWVKLYSWQKEYGILVLSYKLFEELVGKGMRKKRKTE SRKQKGRSVDERIKDVLLDVPGLLVFDEGHTARNNSSLIWRALSKVKTEKRVVLSGTPFQNNFVEFFNTLWMARPNFVDNISSSTFETSHRKRGRRAVNE ATEKWQSLTSYLGKDTDDWLKVMKLQELRDGISPFVHVYKGNILQEKLPGLRDSVVILQPGPFPG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05490		CHR31	chromatin remodeling 31 (.1)		Lus10001090 [exp]	0	1
AT5G52600	MYB	AtMYB82	myb domain protein 82 (.1)		Lus10006647 [exp]	2.2	0.9006
AT2G46570		LAC6	laccase 6 (.1)		Lus10005976 [exp]	2.4	0.8522
AT1G05490		CHR31	chromatin remodeling 31 (.1)		Lus10001091 [exp]	5.5	0.8130
AT2G42200	SBP	SPL9, AtSPL9	squamosa promoter binding prot...		Lus10012020 [exp]	5.5	0.8932
AT1G63650	bHLH	EGL1, ATMYC-2, ...	ENHANCER OF GLABRA 3, basic he...		Lus10024631 [exp]	6.3	0.8694
AT5G56270	WRKY	ATWRKY2, WRKY2,...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10019898 [exp]	6.9	0.8870
AT1G01110		IQD18	IQ-domain 18 (.1.2)		Lus10008876 [exp]	8.7	0.8321
AT1G65890		AAE12	acyl activating enzyme 12 (.1)		Lus10020787 [exp]	8.9	0.8518
AT1G75240	ZF_HD	ATHB33, ZHD5	zinc-finger homeodomain 5, hom...		Lus10026010 [exp]	11.0	0.8567
AT1G47890		AtRLP7	receptor like protein 7 (.1)		Lus10014905 [exp]	11.5	0.8519

Compare expression of checked genes

Lus10001090 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.