Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05490 87 / 6e-21 CHR31 chromatin remodeling 31 (.1) AT3G24340 80 / 2e-18 CHR40 chromatin remodeling 40 (.1) AT3G42670 57 / 2e-10 CLSY1, CLSY, CHR38 CLASSY 1, CLASSY1, chromatin remodeling 38 (.1) AT5G20420 55 / 8e-10 CHR42 chromatin remodeling 42 (.1) AT5G63950 49 / 8e-08 CHR24 chromatin remodeling 24 (.1) AT2G16390 49 / 1e-07 DMS1, CHR35, DRD1 DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1, DEFECTIVE IN MERISTEM SILENCING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) AT1G50410 49 / 1e-07 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) AT2G21450 49 / 2e-07 CHR34 chromatin remodeling 34 (.1) AT3G57300 48 / 3e-07 ATINO80 INO80 ortholog (.1.2) AT3G20010 46 / 9e-07 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040137 [exp] 221 / 2e-76 AT1G05490 91 / 2e-22 chromatin remodeling 31 (.1) Lus10011033 [exp] 124 / 5e-34 AT1G05490 590 / 0.0 chromatin remodeling 31 (.1) Lus10003003 [exp] 123 / 2e-33 AT1G05490 579 / 0.0 chromatin remodeling 31 (.1) Lus10009840 [exp] 57 / 1e-10 AT5G20420 1283 / 0.0 chromatin remodeling 42 (.1) Lus10040956 [exp] 57 / 1e-10 AT5G20420 1316 / 0.0 chromatin remodeling 42 (.1) Lus10011211 [exp] 52 / 1e-08 AT1G61140 959 / 0.0 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3) Lus10018465 [exp] 52 / 2e-08 AT1G61140 546 / 2e-175 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3) Lus10031050 [exp] 50 / 4e-08 AT3G57300 2115 / 0.0 INO80 ortholog (.1.2) Lus10035436 [exp] 50 / 4e-08 AT3G57300 1875 / 0.0 INO80 ortholog (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G050200 [exp] 117 / 8e-32 AT1G05490 592 / 0.0 chromatin remodeling 31 (.1) Potri.008G073500 [exp] 54 / 2e-09 AT3G42670 1120 / 0.0 CLASSY 1, CLASSY1, chromatin remodeling 38 (.1) Potri.011G046400 [exp] 49 / 1e-07 AT1G61140 958 / 0.0 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3) Potri.007G000700 [exp] 48 / 2e-07 AT1G50410 1083 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Potri.003G022100 [exp] 48 / 2e-07 AT3G12810 1824 / 0.0 PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) Potri.001G207700 [exp] 48 / 3e-07 AT3G12810 2199 / 0.0 PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) Potri.009G120700 [exp] 47 / 3e-07 AT2G16390 938 / 0.0 DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1, DEFECTIVE IN MERISTEM SILENCING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) Potri.004G037700 [exp] 47 / 4e-07 AT1G61140 1007 / 0.0 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3) Potri.016G043500 [exp] 47 / 8e-07 AT3G57300 2157 / 0.0 INO80 ortholog (.1.2) Potri.004G159000 [exp] 46 / 9e-07 AT2G16390 811 / 0.0 DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1, DEFECTIVE IN MERISTEM SILENCING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001091 pacid=23148927 polypeptide=Lus10001091 locus=Lus10001091.g ID=Lus10001091.BGIv1.0 annot-version=v1.0 ATGTTCCGAAGGAATCAGTTTGATTGGTGCATGGTCGTGTTGCTTGAAGTCGTGTGGAACCCGTCAGTGGCGAAACAAGCCATAAGTAGGGCTTACAGGC TTGGCCAGACCAAAGTAGTTCATGTATACAATCTCATCACTTCTATTGAAGAGGATAAGTTCTGGTGCCAGGTCGAAAAGGACCAAATGTCAGAGTTGGT TCTTCATTCTGCTATAGGAGCCGATGGCTGCAAAAGGGTTCCCTCACAAGTCTCTCGGGATCCAGAGGATAGAATTCTGGAAAAGATGTTTGAATGTGAG AAACTCGAGGTTATGTTCAAGAAGGTAATTAGTCAGCCTAAAGATTCTAAGGTCGTCTGA
AA sequence Show only first row Show all	>Lus10001091 pacid=23148927 polypeptide=Lus10001091 locus=Lus10001091.g ID=Lus10001091.BGIv1.0 annot-version=v1.0 MFRRNQFDWCMVVLLEVVWNPSVAKQAISRAYRLGQTKVVHVYNLITSIEEDKFWCQVEKDQMSELVLHSAIGADGCKRVPSQVSRDPEDRILEKMFECE KLEVMFKKVISQPKDSKVV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05490		CHR31	chromatin remodeling 31 (.1)		Lus10001091 [exp]	0	1
AT1G05490		CHR31	chromatin remodeling 31 (.1)		Lus10001090 [exp]	5.5	0.8130
AT2G42200	SBP	SPL9, AtSPL9	squamosa promoter binding prot...		Lus10012020 [exp]	20.6	0.7669
AT1G65890		AAE12	acyl activating enzyme 12 (.1)		Lus10020787 [exp]	20.9	0.7602
AT4G32780			phosphoinositide binding (.1)		Lus10009508 [exp]	21.5	0.7625
AT1G02090		ATCSN7, COP15, ...	FUSCA 5, CONSTITUTIVE PHOTOMOR...		Lus10042908 [exp]	28.2	0.6503
AT5G52600	MYB	AtMYB82	myb domain protein 82 (.1)		Lus10006647 [exp]	28.8	0.7574
					Lus10001089 [exp]	30.7	0.7069
AT1G05490		CHR31	chromatin remodeling 31 (.1)		Lus10040137 [exp]	32.2	0.7336
AT1G63650	bHLH	EGL1, ATMYC-2, ...	ENHANCER OF GLABRA 3, basic he...		Lus10024631 [exp]	35.9	0.7423
AT4G32570	ZIM	TIFY8	TIFY domain protein 8 (.1)		Lus10008101 [exp]	39.5	0.7260

Compare expression of checked genes

Lus10001091 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.