Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27430 303 / 3e-107 Signal peptidase subunit (.1) AT3G05230 277 / 7e-97 Signal peptidase subunit (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040138 [exp] 329 / 2e-117 AT5G27430 301 / 1e-106 Signal peptidase subunit (.1) Lus10004463 [exp] 264 / 1e-90 AT5G27430 254 / 5e-87 Signal peptidase subunit (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G058000 [exp] 303 / 5e-107 AT5G27430 252 / 6e-87 Signal peptidase subunit (.1) Potri.005G036200 [exp] 302 / 6e-107 AT5G27430 252 / 5e-87 Signal peptidase subunit (.1) Potri.006G234600 [exp] 296 / 2e-104 AT5G27430 266 / 2e-92 Signal peptidase subunit (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04573 [flax] [poplar] SPC22 Signal peptidase subunit
Representative CDS sequence Show only first row Show all	>Lus10001092 pacid=23148919 polypeptide=Lus10001092 locus=Lus10001092.g ID=Lus10001092.BGIv1.0 annot-version=v1.0 ATGCATTCCTTTATATACAGAGCCAATGCCTTGCTCACCTTCGCCATCACCATCCTTGGACTCATATGCGCCATGGCTTCCATCTCTGACAACTTCAATT CTCCTTCCCCTTCTGCTCAAATCCAGATATTGAACATCAATTGGTTTCAGAAACAGCCTCATGGAAATGACGAGGTAAGTCTCACGATGAATATAACAGC CGATCTGCAATCGCTCTTCACATGGAATACAAAGCAGGTTTTCGTATTTATAGCTGCAGAATATGAGACTACGAAGAATGCACTGAACCAGGTATCCCTT TGGGATGCAATTATCCCATCGAAAGAGCATGCAAAGTTTTGGGTTCAAACACCGAACAAGTACCGTTTTGTTGATCAGGGAAGCAATCTCCAGGGGAAGA ACTGCAACTTGACATTGCATTGGCATATCATGCCCAAGAGTGGCAAGATGTTTGCTGACAAGTTAGTTATGTCAGGATACCGTCTGCCAGAAGAGTATAG ATAA
AA sequence Show only first row Show all	>Lus10001092 pacid=23148919 polypeptide=Lus10001092 locus=Lus10001092.g ID=Lus10001092.BGIv1.0 annot-version=v1.0 MHSFIYRANALLTFAITILGLICAMASISDNFNSPSPSAQIQILNINWFQKQPHGNDEVSLTMNITADLQSLFTWNTKQVFVFIAAEYETTKNALNQVSL WDAIIPSKEHAKFWVQTPNKYRFVDQGSNLQGKNCNLTLHWHIMPKSGKMFADKLVMSGYRLPEEYR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27430			Signal peptidase subunit (.1)		Lus10001092 [exp]	0	1
AT1G60660		B5 #5, B5#5, AT...	ARABIDOPSIS CYTOCHROME B5-LIKE...		Lus10012954 [exp]	6.9	0.7490
AT5G16950			unknown protein		Lus10026852 [exp]	6.9	0.7376
AT3G49890			unknown protein		Lus10011541 [exp]	9.1	0.7448
AT1G47278			unknown protein		Lus10040837 [exp]	13.4	0.6962
AT1G71150			unknown protein		Lus10021799 [exp]	15.3	0.6761
AT3G12390			Nascent polypeptide-associated...		Lus10026133 [exp]	17.6	0.7337
AT1G51650			ATP synthase epsilon chain, mi...		Lus10034841 [exp]	19.0	0.6838
AT5G52220			unknown protein		Lus10014990 [exp]	21.6	0.6708
AT1G20580			Small nuclear ribonucleoprotei...		Lus10013227 [exp]	24.5	0.7342
AT1G08580			unknown protein		Lus10040441 [exp]	28.7	0.7225

Compare expression of checked genes

Lus10001092 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.