Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007392 [exp] 103 / 8e-29 ND / Lus10010518 [exp] 96 / 2e-25 ND / Lus10008146 [exp] 95 / 4e-24 ND / Lus10004792 [exp] 92 / 1e-22 ND / Lus10031757 [exp] 85 / 7e-21 ND 39 / 0.002 Lus10030065 [exp] 81 / 1e-18 ND / Lus10040594 [exp] 79 / 1e-18 ND / Lus10026443 [exp] 71 / 2e-15 ND / Lus10036397 [exp] 66 / 3e-14 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001095 pacid=23161336 polypeptide=Lus10001095 locus=Lus10001095.g ID=Lus10001095.BGIv1.0 annot-version=v1.0 ATGGATGGTGTTCTTAATATTCCGAAGAAGGTGATTGAAAAAGGGCTTATTAAGTTGCGAGCTATTGCCACGGCTCAGTTTGTTGGTTCTGCTCCTCCAA TTAGGCCAAATATAGCCCTGTTTGATCTTGAGGTAATGGAGATTCCTACTTGGTTGAGGCTCAAGGATGGTCCCCCTCAACTAATCACTAATGATGGGAT TGAATGGCTTGTGAATCGTATTGGAACTCCAATAAATAAATTCATCAGAGAGGGACTCATTGTCAAAGTCTGTATACTTTTGGAGAAGGGTAAGAAATGC CCTGAAAGCTTGATCAATTTGGAGGGTGATCTTCATACTATTGCAATTGATCTGCCACAAGAAAGGGTTTATGAACATAATAAACAAAAGGTAGCTAAAA ATGAGTGGAGGAAAAAAGTGATAGCTGTTGTCATGGTAGGTCAATCCTCTTTGCAAGGGGAGTTGAGGAAGGAAGCTTGTGAGATAAATGGTGAAAGTGT TAATGAAGATGTGGAGATTTAG
AA sequence Show only first row Show all	>Lus10001095 pacid=23161336 polypeptide=Lus10001095 locus=Lus10001095.g ID=Lus10001095.BGIv1.0 annot-version=v1.0 MDGVLNIPKKVIEKGLIKLRAIATAQFVGSAPPIRPNIALFDLEVMEIPTWLRLKDGPPQLITNDGIEWLVNRIGTPINKFIREGLIVKVCILLEKGKKC PESLINLEGDLHTIAIDLPQERVYEHNKQKVAKNEWRKKVIAVVMVGQSSLQGELRKEACEINGESVNEDVEI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10001095 [exp]	0	1
AT2G44050		COS1	coronatine insensitive1 suppre...		Lus10000192 [exp]	25.1	0.5862
AT1G60750			NAD(P)-linked oxidoreductase s...		Lus10041185 [exp]	31.2	0.6597
AT1G63430			Leucine-rich repeat protein ki...		Lus10008486 [exp]	32.6	0.6488
AT5G23850			Arabidopsis thaliana protein o...		Lus10008017 [exp]	33.7	0.6557
AT1G07130		STN1, ATSTN1	Nucleic acid-binding, OB-fold-...		Lus10022075 [exp]	37.8	0.6308
					Lus10008146 [exp]	40.2	0.6234
AT1G43130		LCV2	like COV 2 (.1)		Lus10028563 [exp]	43.6	0.6553
AT4G05150			Octicosapeptide/Phox/Bem1p fam...		Lus10018412 [exp]	58.1	0.6282
AT3G04580		EIN4	ETHYLENE INSENSITIVE 4, Signal...		Lus10005517 [exp]	74.3	0.5868
AT1G28440		HSL1	HAESA-like 1 (.1)		Lus10039872 [exp]	137.2	0.5790

Compare expression of checked genes

Lus10001095 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.