Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48470 690 / 0 EMB2423 embryo defective 2423 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014791 [exp] 279 / 3e-89 AT3G48470 176 / 4e-51 embryo defective 2423 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G090700 [exp] 711 / 0 AT3G48470 1070 / 0.0 embryo defective 2423 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10193 [flax] [poplar] Telomere_reg-2 Telomere length regulation protein
Representative CDS sequence Show only first row Show all	>Lus10001100 pacid=23171901 polypeptide=Lus10001100 locus=Lus10001100.g ID=Lus10001100.BGIv1.0 annot-version=v1.0 ATGGAAGCTATTAAAGACCCATTCTCCGTAGAAAAATTTGCTGAGCAACTTCTGCTACAGTTGGCCATTAGACATGCAAGCAATACTGAAGCATATTGGA ATATTCATTTACTGTTCAAGCAGAATTTTGAGAAATACCCTTCAGTCAGGTCCCTGTTTCTTGATAAATTCTTGCTGTGGAAAGTATTTCCCCTACGTTG CCTAATATGGATCCTACAGTTTGCTGTTCTTCAGTGTCATCCAATTTCTAATGAACTCACTAAAGGTCATGCAACTGAGGTTTTGGTAGACACAGTGCAG CGTCTTGTGTCAGTATGGTCAAATCAAGAATTTATTCAATCAACCCCTACTGAGCAACAAGTCTGTATCCTTACCCTGTCTGTTTTATGCAAGTCTTTAA ATTGGCATTATTGTGCTCATGATTGCATCTTTAAGAGCATGCACAGTTTCTTCTATGTAACTTCTCTTGCATTCCGATGCACAGTACACGTTCTTGGCTT AATACTGGAGTTCATGGTGCTCCTGAACAGGATATATGTTGTCGTTATGTTTGTGTTACCCTTAATCTACATTACAGATGTAACTGCTGCTATAGGGCTT TGCATGGAGAAGATGTCGAGAGAGGAGTTAGACATGTCTAAAGTTGTGATGCACTCAATTCTCCAAGGAATTAGCTGTAGGCTAGAGAACCCAGGGCATC TAATAAAAAAAATGGCTAGCAATATTGCTTTGGTTTTCTCTAAAGTTATTGACCCTACAAATCCTCTATACCTTGATGACAGCTTTGTTGAGGGGGCTAT TGACTGGGAAGTTGGTTTGAGTAAACATGTCAAGGGAACTCTGGCTGACACTAGCACATTGACAACCGCGGAGTCAGTAGAAGACACAAGTTACAAAACA AATGATCAGCCCAGCACGACCTCAAAATGTGATGACAGGAGAGTTTCTCGGTTTAAGATGATTGATCCAGATGAGATTGTTGACCCAGCTATGCTAAATC ATGAATCAGCTGCCGAGGAGGATGAAGATGATGTTTCAAGTGAGACTTCCGAATCGTCCAGTGATTCTTCTCTGCAGCCATATGACTTGGCAGATGATGA TGCAGATCTAAAACGAAAAGTTACCCATTTGGCTGACGTAGTAGGAGGTCTGCGGAAGTCTGACGATCCTGATGCAGTTGATGGAGCTCTTGATGCTGCT GAAAAGCTTGTGAGGGCATCTCCCGATGAAATTAAACACATAGCAGGCGAACTTGTTCGATGTCTTGTTCAGGTCCGCTGCTCTGATTTTGCAGTCGAGG GAGAGGAAGACTCTGCAGAGGAAAAGAGACAGAGAGCATTGGTTGCCATGCTTGTTACATCTCCTCTTGAGTCACTCCATTCAATAAACCAACTGCTGTA TTCCCCACATGTAGACACTAGCCAGCGCATAATGATTCTTGATGTGATGACCAAAGCAGCTCAAGAACTTTCTTCTTCCAAGACGTTGAAGTCGAGTCAG CAATCTTCAAGAGCCCTTATATCAACTATATCAGAGAGTCAACCCTGGTTCCTGCCAAGTAGTAAGGGGCCTCCTGGTTCTACTCTCTGGAAAGAGGTGT CGGAAACTGGAACGCCATTGAATTACTCACACCGCTATGAGAGAGTAGTTCCATCGAAACGTAGTCAGATCATGAAGGGGAAAACACGTCGTTGGAGCAT CAAATCAGCAACCAGTCAGCATTCTAAGGTGGAAGAATGGACCCAAAACAATTTTCCTGTTTATGCTGCAGCATTCATGCTTCCTGCCATGCAGGGTTTC GATAAGAAGAGGCAGGGTGTTGACTTGCTTGGCAGAGATTTCATCGTACTCGGAAAACTTATCTACATGCTTGGTGTCTGCATGAGATGCGCCTCTCTGC ACCCAGAGGCTTCTGCTTTAGCCTCCCCACTTCTGGAGATGTTAAGGATGAGGGAGATATGCGGTCACAAAGAAGCATACGTTAGGAAATCCGTGCTTTT CGCCGCCTCATCCATATTAGTATCCCTGCATCCTTCATTTGTTGCATCATCTATAACCACGGGAAATTGGGAAGTGGCAAACGGTCTCGAATGGATCCGA ACATGGGCCATTGAAGTCACGGAGTCGGATGTGGATAAAGAATGTTACATGATGGCTATGTCATGCCTCCAGCTTCATGCGGAAATGGCTCTGGAAGCTT CCAGAGCGTTGGAATCCACAGAAAATGCATCCATCACCAACCCGAAAAGTGGTGGCATCAGCCTTCATCCTTCCAATGTGCAGTTGGGAACCATCAAAAT CCCACACTCAAATTTGAAGTACTAG
AA sequence Show only first row Show all	>Lus10001100 pacid=23171901 polypeptide=Lus10001100 locus=Lus10001100.g ID=Lus10001100.BGIv1.0 annot-version=v1.0 MEAIKDPFSVEKFAEQLLLQLAIRHASNTEAYWNIHLLFKQNFEKYPSVRSLFLDKFLLWKVFPLRCLIWILQFAVLQCHPISNELTKGHATEVLVDTVQ RLVSVWSNQEFIQSTPTEQQVCILTLSVLCKSLNWHYCAHDCIFKSMHSFFYVTSLAFRCTVHVLGLILEFMVLLNRIYVVVMFVLPLIYITDVTAAIGL CMEKMSREELDMSKVVMHSILQGISCRLENPGHLIKKMASNIALVFSKVIDPTNPLYLDDSFVEGAIDWEVGLSKHVKGTLADTSTLTTAESVEDTSYKT NDQPSTTSKCDDRRVSRFKMIDPDEIVDPAMLNHESAAEEDEDDVSSETSESSSDSSLQPYDLADDDADLKRKVTHLADVVGGLRKSDDPDAVDGALDAA EKLVRASPDEIKHIAGELVRCLVQVRCSDFAVEGEEDSAEEKRQRALVAMLVTSPLESLHSINQLLYSPHVDTSQRIMILDVMTKAAQELSSSKTLKSSQ QSSRALISTISESQPWFLPSSKGPPGSTLWKEVSETGTPLNYSHRYERVVPSKRSQIMKGKTRRWSIKSATSQHSKVEEWTQNNFPVYAAAFMLPAMQGF DKKRQGVDLLGRDFIVLGKLIYMLGVCMRCASLHPEASALASPLLEMLRMREICGHKEAYVRKSVLFAASSILVSLHPSFVASSITTGNWEVANGLEWIR TWAIEVTESDVDKECYMMAMSCLQLHAEMALEASRALESTENASITNPKSGGISLHPSNVQLGTIKIPHSNLKY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48470		EMB2423	embryo defective 2423 (.1)		Lus10001100 [exp]	0	1
AT5G55100			SWAP (Suppressor-of-White-APri...		Lus10032646 [exp]	5.6	0.9172
AT3G44680		HDA09, HDA9	histone deacetylase 9 (.1)		Lus10006274 [exp]	6.0	0.8617
AT1G79610		ATNHX6	Na+/H+ antiporter 6, ARABIDOPS...		Lus10039131 [exp]	6.8	0.9132
AT1G70650			Ran BP2/NZF zinc finger-like s...		Lus10003580 [exp]	8.9	0.8996
AT2G25850		PAPS2	poly(A) polymerase 2 (.1), pol...		Lus10037589 [exp]	9.7	0.8988
AT4G14290			alpha/beta-Hydrolases superfam...		Lus10001114 [exp]	10.1	0.9011
AT3G56720			unknown protein		Lus10038984 [exp]	12.0	0.8747
AT5G14590			Isocitrate/isopropylmalate deh...		Lus10013090 [exp]	13.5	0.8960
AT4G11640		ATSR	serine racemase (.1)		Lus10008490 [exp]	15.5	0.8952
AT5G44090			Calcium-binding EF-hand family...		Lus10003628 [exp]	15.6	0.8910

Compare expression of checked genes

Lus10001100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.