Plant FIBer expression Database

Lus10001101 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G48470 174 / 6e-50 EMB2423 embryo defective 2423 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G090700
[exp]
219 / 1e-65 AT3G48470 1070 / 0.0 embryo defective 2423 (.1)
PFAM info
Representative CDS sequence
>Lus10001101 pacid=23171894 polypeptide=Lus10001101 locus=Lus10001101.g ID=Lus10001101.BGIv1.0 annot-version=v1.0
ATGGAGAACGACGGAGCGAGGAGGAAGGAGCTGGAGACGATGCTTCTTGACGAGGTCGGAGGAGTAATCTCAGCGATAAAGGAAGCCAAAGACGTCGACC
AAGTGATTTGCTCTCTTCACTCCCTTGCTGTTCTTCTCTTCCCTACAGATACCTCGCTCATCGTTGGTAGTCTCGACCAGCCTCATAGGGACCAGGTTCT
GAGTGCGAAAATCCCCGCTGCAAATGTGCGGAAGGATTCATGGCGAGTGTTCTACAAGGGAGCTGGATTTCCAACTCTCGCTAGAGTCTTACTACTTGAT
GTTGCTTCCAATTGGTTAGCTTGTTTCCCCTTCTCAGCAAGGCAGCATGTATATGATGTGTACTTTGTTCATGGGCTTGCAATAGAGGTCATCCAGAGTT
TGGTTCCGTGCTTACGTTGCAATTTTAGTGATGGTATTGATGCAAAGGCAGTTCAATTGAATACAGAAAGGTTGCTCGTCCTCTGCTTGCTTGAAAATGG
TGGTCTGCTCCAAATGTCCAGAGAACTTGGTGACTTATCTGATGAGTTGACACAGGCACAGCTTCTTTCAGTCATACCTAGAATGGCACAGATTGTGACA
TCGATTCCTGACAAAGCACCACAAAGAGCATCTAGTTCGCTTTCATCGCAGTATCCTTGCTGTTTCAATTGCTTACTAATATTATGTTGTCATGTTCAGC
CATCTTGA
AA sequence
>Lus10001101 pacid=23171894 polypeptide=Lus10001101 locus=Lus10001101.g ID=Lus10001101.BGIv1.0 annot-version=v1.0
MENDGARRKELETMLLDEVGGVISAIKEAKDVDQVICSLHSLAVLLFPTDTSLIVGSLDQPHRDQVLSAKIPAANVRKDSWRVFYKGAGFPTLARVLLLD
VASNWLACFPFSARQHVYDVYFVHGLAIEVIQSLVPCLRCNFSDGIDAKAVQLNTERLLVLCLLENGGLLQMSRELGDLSDELTQAQLLSVIPRMAQIVT
SIPDKAPQRASSSLSSQYPCCFNCLLILCCHVQPS

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G48470 EMB2423 embryo defective 2423 (.1) Lus10001101
[exp]
0 1
AT4G16310 LDL3 LSD1-like 3 (.1) Lus10033928
[exp]
3.9 0.9429
AT5G19400 SMG7 Telomerase activating protein ... Lus10036041
[exp]
5.3 0.9037
AT3G59410 ATGCN2, GCN2 ARABIDOPSIS THALIANA GENERAL C... Lus10014897
[exp]
6.0 0.9397
AT5G37590 Tetratricopeptide repeat (TPR)... Lus10020811
[exp]
6.5 0.8826
AT1G79190 ARM repeat superfamily protein... Lus10016753
[exp]
8.0 0.9139
AT2G28290 CHR3, SYD SPLAYED, CHROMATIN REMODELING ... Lus10012798
[exp]
8.8 0.9326
AT3G04490 unknown protein Lus10022024
[exp]
9.2 0.8919
AT4G13750 EMB2597, NOV NO VEIN, EMBRYO DEFECTIVE 2597... Lus10016661
[exp]
9.6 0.8952
AT5G55840 Pentatricopeptide repeat (PPR)... Lus10037968
[exp]
11.0 0.9048
AT4G16310 LDL3 LSD1-like 3 (.1) Lus10024311
[exp]
12.2 0.9197

Lus10001101 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.