Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50320 1018 / 0 EAST1, AtELP3, HAC8, ELO3 ,HAG3 HISTONE ACETYLTRANSFERASE OF THE GNAT FAMILY 3, HISTONE ACETYLTRANSFERASE 8, ELONGATA 3, enhancer-of-asymmetric leaves-two 1, Elongator protein 3, radical SAM domain-containing protein / GCN5-related N-acetyltransferase (GNAT) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014792 [exp] 1081 / 0 AT5G50320 1088 / 0.0 HISTONE ACETYLTRANSFERASE OF THE GNAT FAMILY 3, HISTONE ACETYLTRANSFERASE 8, ELONGATA 3, enhancer-of-asymmetric leaves-two 1, Elongator protein 3, radical SAM domain-containing protein / GCN5-related N-acetyltransferase (GNAT) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G090500 [exp] 1040 / 0 AT5G50320 1065 / 0.0 HISTONE ACETYLTRANSFERASE OF THE GNAT FAMILY 3, HISTONE ACETYLTRANSFERASE 8, ELONGATA 3, enhancer-of-asymmetric leaves-two 1, Elongator protein 3, radical SAM domain-containing protein / GCN5-related N-acetyltransferase (GNAT) family protein (.1) Potri.012G092800 [exp] 1036 / 0 AT5G50320 1031 / 0.0 HISTONE ACETYLTRANSFERASE OF THE GNAT FAMILY 3, HISTONE ACETYLTRANSFERASE 8, ELONGATA 3, enhancer-of-asymmetric leaves-two 1, Elongator protein 3, radical SAM domain-containing protein / GCN5-related N-acetyltransferase (GNAT) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [flax] [poplar] TIM_barrel PF04055 [flax] [poplar] Radical_SAM Radical SAM superfamily CL0257 [flax] [poplar] Acetyltrans PF00583 [flax] [poplar] Acetyltransf_1 Acetyltransferase (GNAT) family
Representative CDS sequence Show only first row Show all	>Lus10001102 pacid=23171897 polypeptide=Lus10001102 locus=Lus10001102.g ID=Lus10001102.BGIv1.0 annot-version=v1.0 ATGGCGACGGCGACGGCGACGGCGACCGTGGTGAAGACGAGTAAGAAGCAACCGAGGCCGGGTCGGGGCGGATTCCAAGCCCATGGCCTGACGGAGGAAG AAGCTAGAGTGAGGGCCATAGCGGAAATCGTGAACTCTATGGTGGAGCTTTCCCGCAAGAATCAAACAGTCGACCTCAACGCAATCAAATCCGCCGCCTG CCGGAAGTATGGGCTTTCTAGAGCACCGAAGCTGGTGGAGATGATTGCGGCTCTCCCTGAGTCCGACCGTGAGTCGCTGCTGCCAAAGCTCAAAGCCAAG CCGGTCAGAACTGCCTCAGGGATTGCTGTTGTCGCCGTCATGTCGAAGCCGCACCGTTGTCCTCATATTGCGACGACGGGCTGGTGGAACATTTGTGTTT ATTGTCCTGGTGGACCGGACTCCGATTTTGAGTATAGTACTCAGTCGTATACTGGTTACGAGCCGACTAGCATGCGAGCCATTCGAGCTAGGTATAACCC ATATGTTCAAGCTAGGAGCAGGATTGATCAGCTTAAGCGTTTGGGTCACAGCGTGGATAAGGTTGAGTTCATATTGATGGGTGGCACATTCATGTCACTG GCAGCAGACTATCGTGATTACTTTATAAGAAACCTCCACGATGCTCTATCTGGGCACACTTCTGCCAATGTTGAAGAGGCAGTTGCCTACTCTGAACATG GTGCGACAAAATGTATTGGCATGACAATCGAGACGAGGCCGGATTATTGTCTTGGACCTCACTTGAGGCAGATGCTCCTTTATGGCTGTACAAGATTGGA GATCGGTGTTCAAAGCACATATGAAGATGTTGCACGGGACACCAACAGAGGACACACTGTAGCTGCTGTTGCTGATTGTTTTTGTTTGGCCAAGGACGCT GGTTTCAAGGTTGTTGCGCATATGATGCCTGATCTTCCCAATGTGGGTGTTGAGAGAGACATGGAGAGTTTTCGTGAATTTTTTGAAAGCCCTTCATTTA GAGCTGATGGACTAAAAATCTATCCTACTCTTGTCATCCGCGGAACTGGGCTGTATGAACTTTGGAAAACTGGCAGATACAGGAATTATCCACCTGAGCA ACTCGTAGATATTGTAGCAAGGATCTTGGCCTTGGTACCACCTTGGACACGGGTTTACAGAGTTCAGCGTGATATTCCCATGCCTTTGGTTACATCTGGT GTTGAGAAAGGAAATCTACGTGAGCTAGCTTTAGCGCGGATGGATGATTTGGGCTTGAAATGCCGAGACGTCCGCACACGCGAGGCTGGAATTCAGGATA TTCATAACAAGATAAAACCTGATGAGGTTGAGCTTGTGCGCCGTGAATACACAGCTAATGAAGGCTGGGAAACATTCCTATCGTATGAGGATACACGGCA GGACATTCTTGTAGGGCTGCTGAGGTTGCGTAAATGCGGCAGAAATGTCACGTGCCCTGAGCTTACTGGGAGGTGCTCTATAATTCGTGAACTCCATGTT TATGGGACTGCAGTTCCTGTTCATGGGCGTGAAGCAGACAAGCTGCAACACCAGGGATACGGCACACTTCTGATGGAAGAGGCGGAGAGGATAGCGTCGA GGGAACATAGATCAACTAAAATAGCTGTAATCTCCGGTGTAGGAACCCGACATTACTATAGGAAATTAGGCTATGAACTTGAAGGCCCTTTCATGGTCAA ATACCTAGCTTAA
AA sequence Show only first row Show all	>Lus10001102 pacid=23171897 polypeptide=Lus10001102 locus=Lus10001102.g ID=Lus10001102.BGIv1.0 annot-version=v1.0 MATATATATVVKTSKKQPRPGRGGFQAHGLTEEEARVRAIAEIVNSMVELSRKNQTVDLNAIKSAACRKYGLSRAPKLVEMIAALPESDRESLLPKLKAK PVRTASGIAVVAVMSKPHRCPHIATTGWWNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFILMGGTFMSL AADYRDYFIRNLHDALSGHTSANVEEAVAYSEHGATKCIGMTIETRPDYCLGPHLRQMLLYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDA GFKVVAHMMPDLPNVGVERDMESFREFFESPSFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILALVPPWTRVYRVQRDIPMPLVTSG VEKGNLRELALARMDDLGLKCRDVRTREAGIQDIHNKIKPDEVELVRREYTANEGWETFLSYEDTRQDILVGLLRLRKCGRNVTCPELTGRCSIIRELHV YGTAVPVHGREADKLQHQGYGTLLMEEAERIASREHRSTKIAVISGVGTRHYYRKLGYELEGPFMVKYLA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G50320		EAST1, AtELP3, ...	HISTONE ACETYLTRANSFERASE OF T...		Lus10001102 [exp]	0	1
AT1G49600		ATRBP47A	RNA-binding protein 47A (.1)		Lus10027911 [exp]	3.2	0.9337
AT4G04790			Tetratricopeptide repeat (TPR)...		Lus10043070 [exp]	3.5	0.9286
AT3G11710		ATKRS-1	lysyl-tRNA synthetase 1 (.1)		Lus10001440 [exp]	4.2	0.9136
AT5G22060		ATJ2	ARABIDOPSIS THALIANA DNAJ HOMO...		Lus10042891 [exp]	4.5	0.9275
AT3G13920		RH4, TIF4A1, EI...	eukaryotic translation initiat...		Lus10037620 [exp]	4.5	0.9221
AT2G03670		CDC48B	cell division cycle 48B (.1)		Lus10042029 [exp]	4.6	0.9073
AT1G31600		AtTRM9	Arabidopsis thaliana tRNA meth...		Lus10037263 [exp]	5.7	0.8844
AT1G09810		ECT11	evolutionarily conserved C-ter...		Lus10035790 [exp]	6.5	0.9304
AT1G13160			ARM repeat superfamily protein...		Lus10006236 [exp]	7.3	0.8982
AT5G16260		ELF9	EARLY FLOWERING 9, RNA binding...		Lus10026858 [exp]	9.3	0.8718

Compare expression of checked genes

Lus10001102 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.