Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06620 385 / 3e-133 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G06650 369 / 9e-127 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT2G30840 365 / 2e-125 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G06640 352 / 6e-120 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) AT5G59530 343 / 2e-116 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G06645 343 / 2e-116 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G30830 337 / 2e-114 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G59540 337 / 5e-114 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT1G04350 335 / 2e-113 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G43440 335 / 2e-113 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022193 [exp] 546 / 0 AT1G06620 455 / 1e-160 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10027586 [exp] 540 / 0 AT1G06620 449 / 2e-158 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022191 [exp] 415 / 1e-144 AT1G06620 456 / 3e-161 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022195 [exp] 405 / 5e-141 AT1G06620 432 / 1e-151 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10027585 [exp] 401 / 2e-139 AT1G06620 429 / 3e-150 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10021943 [exp] 401 / 4e-139 AT1G06620 443 / 5e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022196 [exp] 399 / 1e-138 AT5G59530 420 / 5e-147 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10021203 [exp] 399 / 1e-138 AT1G06620 416 / 2e-145 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022415 [exp] 397 / 1e-137 AT1G06620 432 / 6e-152 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G073232 [exp] 424 / 1e-148 AT1G06620 402 / 7e-140 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G073166 [exp] 405 / 4e-141 AT1G06620 470 / 7e-167 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G073300 [exp] 387 / 1e-133 AT1G06620 455 / 7e-161 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G073100 [exp] 347 / 6e-118 AT1G06650 414 / 2e-144 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.008G165400 [exp] 342 / 4e-116 AT1G06620 444 / 1e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.011G156200 [exp] 341 / 8e-116 AT1G06650 430 / 7e-151 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.017G135800 [exp] 305 / 2e-101 AT1G06620 323 / 1e-108 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.005G222300 [exp] 300 / 2e-99 AT1G06620 340 / 3e-115 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.013G045000 [exp] 296 / 4e-98 AT1G06620 369 / 6e-127 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.002G040700 [exp] 295 / 2e-97 AT1G06620 330 / 2e-111 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10001103 pacid=23171900 polypeptide=Lus10001103 locus=Lus10001103.g ID=Lus10001103.BGIv1.0 annot-version=v1.0 ATGGCAACATCATCAACTCATGAGCTTGCAGCCTACGATAGACTCGCGGAGCTGAAATGGTTTGACGGAACCAAAGCCGGGGTGAAAGGGCTCGTAGAGT CCGGAATCAACCACCTCCCTCGAATCTTCCACGCCCCGCCTCATCTCCTCGACGACATCATCCCGCCATTCACCACCACCGATCCTCCCGAATCCAAAAT TCCAATCATAGACCTGGAAGGCGGCATACTTAGACCCCAAACTCAACATCCTGCATCCAAGCGGAAGGAGATAGTGGCGAAACTCAGGGACGCGTCACAA CAATGTGGGTTTTTCCAAATAGTCAACCACGGGATCCCAGACACAGTGATGGAGGAAATGAAGTCAGGGGTGCACAGATTTCACGACCAGAATGTGGAAC GGAGGAGACCGTACTACACCCGTGATTTCAACTCTAGGATCGTTTACAACAGCAATTTCGATCTGTACAGTGGACCATCTGCCAACTGGAGGGACAGTGT GTCTTTCAACATGGCTCCGGATCCTCAGAAGCCCGACCAGTTACCCGCTGTGTGTGGAGACATCGTGGCGGAGTATTCTGGGCAAGTGACGAAACTGGGC TATCTGTTGTTTGAGCTGCTGTCGGAAGCTCTCGGTCTAGAGTCAAGTCACTTGAAGGATTTGGAGTGTGGGAGAGGACTTCAGGTGGTGTGCAATTACT ACCCGGCTTGCCCTCAACCACATTTGACATTGGGAGCTACCAAACATGCTGATAAAGATTTCATCACCATCCTTCTGCAAGACCATATCGGTGGCCTACA GGCTCGCTGTCATGGCCAGTGGGTTGATGTGCCTTCCTTGCCTGGAGCCTTAGTCATCAATATTGGAGATCTTCTCCAGCTGGTTTCAAATGATAAGTTT ATAAGTGTGGAGCATAGAGTAGTAGCAAACTGCAAGGGACCAAGAGTATCAGTGGCATGTTTGTTTGGGACATACCTGCATCCAAATCCGAAAAAGTACG GGCCAATAAAGGAGTTGTTATCGGACGAGAATCTTCCAAAGTATAGGGAAACCACTACTGCAGAATACGTCTCCACTGGAAACAAGACTGGGCTTGATGG CACTTCTACTCTCATGCATTTCAAGCTCTGA
AA sequence Show only first row Show all	>Lus10001103 pacid=23171900 polypeptide=Lus10001103 locus=Lus10001103.g ID=Lus10001103.BGIv1.0 annot-version=v1.0 MATSSTHELAAYDRLAELKWFDGTKAGVKGLVESGINHLPRIFHAPPHLLDDIIPPFTTTDPPESKIPIIDLEGGILRPQTQHPASKRKEIVAKLRDASQ QCGFFQIVNHGIPDTVMEEMKSGVHRFHDQNVERRRPYYTRDFNSRIVYNSNFDLYSGPSANWRDSVSFNMAPDPQKPDQLPAVCGDIVAEYSGQVTKLG YLLFELLSEALGLESSHLKDLECGRGLQVVCNYYPACPQPHLTLGATKHADKDFITILLQDHIGGLQARCHGQWVDVPSLPGALVINIGDLLQLVSNDKF ISVEHRVVANCKGPRVSVACLFGTYLHPNPKKYGPIKELLSDENLPKYRETTTAEYVSTGNKTGLDGTSTLMHFKL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10001103 [exp]	0	1
AT1G62420			Protein of unknown function (D...		Lus10003258 [exp]	1.0	0.9871
AT5G09360		LAC14	laccase 14 (.1)		Lus10006157 [exp]	4.0	0.9864
AT1G17860			Kunitz family trypsin and prot...		Lus10013731 [exp]	4.9	0.9842
AT1G64660		ATMGL	methionine gamma-lyase (.1)		Lus10017333 [exp]	5.7	0.9712
AT1G17860			Kunitz family trypsin and prot...		Lus10039163 [exp]	6.7	0.9846
AT1G03940			HXXXD-type acyl-transferase fa...		Lus10039746 [exp]	6.9	0.9764
AT5G25240			unknown protein		Lus10006290 [exp]	10.0	0.9577
AT3G28210		SAP12, PMZ	STRESS-ASSOCIATED PROTEIN 12, ...		Lus10039469 [exp]	11.6	0.9796
AT1G17860			Kunitz family trypsin and prot...		Lus10007892 [exp]	12.0	0.9745
AT1G17860			Kunitz family trypsin and prot...		Lus10039210 [exp]	13.0	0.9733

Compare expression of checked genes

Lus10001103 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.