Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63290 611 / 0 Radical SAM superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G092900 [exp] 711 / 0 AT5G63290 629 / 0.0 Radical SAM superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [flax] [poplar] TIM_barrel PF04055 [flax] [poplar] Radical_SAM Radical SAM superfamily CL0123 [flax] [poplar] HTH PF06969 [flax] [poplar] HemN_C HemN C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10001104 pacid=23171895 polypeptide=Lus10001104 locus=Lus10001104.g ID=Lus10001104.BGIv1.0 annot-version=v1.0 ATGCTATTGCTAAAGTCAGCAAGGGTTCCTCTACTCTCAACCTTTCCGGCCAACCGACGGACTCTGCAAACCATCCTAATCCCATCCAGGGCGACATTCA TCACCAAGGCATCTACACAATCCCCACCACCTGTTTGTCAAAATGCCTCACTGAACCCACCTACCAATATCCTCCCCCCAGCCTCAGCCTACATACACCT CCCTTTCTGCCGCAAACGCTGCCACTACTGCGACTTCCCGATTGTTGCCCTCGGCTCCGCCAACCCCACTGATTCTGACCCGCGAATTGCAAACTATGTT GAACTTCTCCGTCAGGAGATAGTCGCCACAAGAGCTGGTTATGATGAACCCCACCCGCCGCTTGAGACAGTATTCTTCGGAGGAGGAACGCCTTCTTTAG TTTCTCCGAATCTGGTTTCCTCCATTCTCGAGACTCTCAGGGCGAAGTTTGGTATCGCTGATGACGCAGAGATATCAATGGAGATGGATCCCGGGACGTT TGATGGTAGGAAATTGAAGGATATGATGGGGTTAGGCGTAAACAGGGTGTCGTTGGGAGTTCAGTCGTTTCAGGAAGAGTTGCTGAGGGCTTGCGGGAGA GCGCATGGGATTAAGGAGGTTTACGAAGCGATTGAGATTGTTGGGTCTTGCGGGGTTCAGAACTGGAGTTTAGACCTCATTTCCTCCTTACCTCATCAAA CGCATGAAATGTGGGAGGAAAGCTTGAGGCTTGCTGTTGATTCTCAGCCTCATCATGTGTCTGTGTACGATTTGCAGGTCGAGCAAGACACCAAATTTGG ACTTGTGTACACTCCAGGTGAATTCCCTCTGCCTTCTGAAACGCAGTCTGCTGACTTTTACCGGATGGCTTCTAAGATCCTGACCAATGCTGGTTACACC CATTACGAAATCAGTAGCTATGCTAAAGATGGGTACGAATGTAAGCACAATTCTATCTACTGGAAGACCAAACCTTTCTATGGATTTGGCCTTGGCTCTG CCAGCTACGTCAATGGATTAAGGTTTTCAAGACCAAAGAAGATGAAAGACTATGCAACTTTTGTGCAGAATCTTGAATCTGGCGTAGCAGATTTAAGTGG GAACAACCCTAATGCTGACGCCAAAGACTTAGCTTTAGATGTCGTGATGCTCTCACTTAGAACAGCAAGAGGGTTGGATGTAAGATCGTTTGGAGAATCA TTTGGTGGATCAATGGTGTCCTCTCTCTGCGAGGTGTATAAGCCTTACGTTGATAGTGGGCATGTGGTTTGCTTAGATAAAGAACGAAGGCCCATGAATG CAGAGGAATTCAACAAGCTGATGACAGTGGGTGGCAATCAGATTCCAGGTGCATTAGGGTTTATCCGGCTAAGTGATCCAGATGGTTTCCTTCTGTCAAA TGAATTGATATCTCTAGCGTTTCGTGCCATAGCACCTTAG
AA sequence Show only first row Show all	>Lus10001104 pacid=23171895 polypeptide=Lus10001104 locus=Lus10001104.g ID=Lus10001104.BGIv1.0 annot-version=v1.0 MLLLKSARVPLLSTFPANRRTLQTILIPSRATFITKASTQSPPPVCQNASLNPPTNILPPASAYIHLPFCRKRCHYCDFPIVALGSANPTDSDPRIANYV ELLRQEIVATRAGYDEPHPPLETVFFGGGTPSLVSPNLVSSILETLRAKFGIADDAEISMEMDPGTFDGRKLKDMMGLGVNRVSLGVQSFQEELLRACGR AHGIKEVYEAIEIVGSCGVQNWSLDLISSLPHQTHEMWEESLRLAVDSQPHHVSVYDLQVEQDTKFGLVYTPGEFPLPSETQSADFYRMASKILTNAGYT HYEISSYAKDGYECKHNSIYWKTKPFYGFGLGSASYVNGLRFSRPKKMKDYATFVQNLESGVADLSGNNPNADAKDLALDVVMLSLRTARGLDVRSFGES FGGSMVSSLCEVYKPYVDSGHVVCLDKERRPMNAEEFNKLMTVGGNQIPGALGFIRLSDPDGFLLSNELISLAFRAIAP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G63290			Radical SAM superfamily protei...		Lus10001104 [exp]	0	1
AT5G51690		ACS12	1-amino-cyclopropane-1-carboxy...		Lus10015023 [exp]	3.7	0.8743
AT4G14050			Pentatricopeptide repeat (PPR)...		Lus10018278 [exp]	4.0	0.8866
AT5G37570			Pentatricopeptide repeat (PPR-...		Lus10022701 [exp]	5.5	0.8645
AT5G02950			Tudor/PWWP/MBT superfamily pro...		Lus10040367 [exp]	6.1	0.9043
AT1G48650			DEA(D/H)-box RNA helicase fami...		Lus10009012 [exp]	6.5	0.8948
AT2G25320			TRAF-like family protein (.1)		Lus10001490 [exp]	9.9	0.8872
AT2G37310			Pentatricopeptide repeat (PPR)...		Lus10025273 [exp]	10.1	0.8789
AT3G61780		EMB1703	embryo defective 1703 (.1)		Lus10004004 [exp]	12.3	0.8558
AT1G09010			glycoside hydrolase family 2 p...		Lus10004484 [exp]	13.0	0.8528
AT2G30780			Tetratricopeptide repeat (TPR)...		Lus10029620 [exp]	13.1	0.8692

Compare expression of checked genes

Lus10001104 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.