Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06240 105 / 9e-25 F-box family protein (.1) AT3G07870 79 / 5e-16 F-box and associated interaction domains-containing protein (.1) AT3G16210 69 / 1e-12 F-box family protein (.1) AT2G16220 67 / 7e-12 F-box and associated interaction domains-containing protein (.1) AT3G23260 66 / 1e-11 F-box and associated interaction domains-containing protein (.1) AT4G12560 66 / 1e-11 CPR1, CPR30 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) AT3G17540 64 / 7e-11 F-box and associated interaction domains-containing protein (.1) AT3G17530 62 / 2e-10 F-box and associated interaction domains-containing protein (.1) AT3G22730 58 / 4e-09 F-box and associated interaction domains-containing protein (.1) AT1G47790 56 / 2e-08 F-box and associated interaction domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014793 [exp] 366 / 8e-128 AT3G06240 51 / 9e-08 F-box family protein (.1) Lus10023372 [exp] 181 / 4e-52 AT3G16210 67 / 5e-12 F-box family protein (.1) Lus10027824 [exp] 155 / 6e-43 AT3G06240 78 / 2e-15 F-box family protein (.1) Lus10015408 [exp] 155 / 2e-42 AT3G16210 64 / 6e-11 F-box family protein (.1) Lus10028961 [exp] 145 / 4e-39 AT4G12560 81 / 2e-16 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10029725 [exp] 140 / 2e-37 AT3G06240 74 / 3e-14 F-box family protein (.1) Lus10009424 [exp] 131 / 8e-34 AT3G06240 73 / 9e-14 F-box family protein (.1) Lus10018095 [exp] 115 / 7e-28 ND 49 / 4e-06 Lus10018969 [exp] 106 / 8e-27 AT1G32420 47 / 4e-06 F-box and associated interaction domains-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G099733 [exp] 108 / 3e-26 AT3G16210 92 / 2e-20 F-box family protein (.1) Potri.010G207500 [exp] 105 / 4e-25 AT4G12560 94 / 3e-21 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.017G012200 [exp] 98 / 3e-22 AT4G12560 86 / 4e-18 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.002G223000 [exp] 97 / 9e-22 AT3G07870 467 / 5e-164 F-box and associated interaction domains-containing protein (.1) Potri.017G058000 [exp] 95 / 2e-21 AT3G06240 138 / 5e-37 F-box family protein (.1) Potri.014G162600 [exp] 95 / 3e-21 AT3G07870 467 / 9e-164 F-box and associated interaction domains-containing protein (.1) Potri.005G114900 [exp] 94 / 5e-21 AT3G21410 73 / 9e-14 F-box and associated interaction domains-containing protein (.1) Potri.001G035500 [exp] 90 / 1e-19 AT4G12560 271 / 3e-87 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.016G012700 [exp] 85 / 8e-18 AT4G12560 143 / 3e-38 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.006G013000 [exp] 85 / 1e-17 AT4G12560 250 / 5e-79 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0162 [flax] [poplar] FBA PF07734 [flax] [poplar] FBA_1 F-box associated CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10001105 pacid=23171892 polypeptide=Lus10001105 locus=Lus10001105.g ID=Lus10001105.BGIv1.0 annot-version=v1.0 ATGGCAACTGAAGAGAGCAACATCAACTGCTACTTGACGGAGGAACTGGTAATCCAAATCTTGCTCAGGCTCCCCATGGCTTCCTGCCTCGCCAGACTCC GATGCGTCTGCAAATCATGGTGCGCTATCCTCTCGGATCCAAAATTCATCCGCGATCTCATCTTCTTCCGGAATTCCTCTGATCTCCGTCTGATGATCAA GCGGCTCAGTCACGATCGGTCAGTTTACTCCCTTCACTCTTATGATACGCTCCGCCTCCTCGCTTCTTCTGAGGAGGAGGAGGAGGAAGACGACGTGCCG TCTCTCCCTTACAAGGTTCGTTGGCCTAACGGTACCTCTAACTTATCAATTGTTGGATGCTGTAACGGCATCTTCTGCCTGGCCGACGGAAACAGCGACG GCGCCTCAGATATCATTCTCTGGAACCCGGAAACTTCCGAGACCAAGGTTCTTCCGGTTTCTCCATTTGCTCATTTACGCGGCTTTGTCGTCTGGGGTCA GCTTGAGAAGATCGGGTTTGGTTTCGACCCGGTAACCAATGACTTCAAAGTTGTTCGCACTCTGCAATTCTCTCCTGCCGATAATGATGATGACGACTAC GATGATGATCGTAACTACTCGGAGGAGGATGAGGACGAGATGACGAGGAGTGAGGTTTACAGTTTGAGGAACGATTCATGGAGGAAACTGGATGGTGGAT TTGCTCATGCGCTTCTCTACAGCATTCCCGATTGCCAAGACGGGAGATTCTACTGGTGGGATGACGACCAGGAGGAAGGTTATACGGATTTCGTTTCCTT TGATATGACGAGTGAAGTGTTTGAAACAATCCAAGTGCCTAACCCAGCCGAGATGTTGTCCAAATTCGACATCCGATCAGTTTCCATGGTGAAAGGGTCT GCAGTGGCCATATTTTCTGACATGGAAACTGTGGAAGTAGCCAATTCAATGGAGATATGGATGGCGATGAAGCTGGGAGGTGCATGGATGAAGCTGTGGA GCATCGGAAACAACCTCGGGATGAAGTGCGTGCATCCAGTTGGGATGTGGAGGAATGGTGAGTGTTTCCTGCAGAGGTATGATAATGGTGAGCTCATCGT CTTCAATCCCGAAACTGGAGATATTAGGGAGCTTAAGATTGAAGGGGAGTGGCAGTTCTTTCAACTTGTTCCTTATGCTCCCTCGCAGATTCCCCTGCTG GATTTCTCATGA
AA sequence Show only first row Show all	>Lus10001105 pacid=23171892 polypeptide=Lus10001105 locus=Lus10001105.g ID=Lus10001105.BGIv1.0 annot-version=v1.0 MATEESNINCYLTEELVIQILLRLPMASCLARLRCVCKSWCAILSDPKFIRDLIFFRNSSDLRLMIKRLSHDRSVYSLHSYDTLRLLASSEEEEEEDDVP SLPYKVRWPNGTSNLSIVGCCNGIFCLADGNSDGASDIILWNPETSETKVLPVSPFAHLRGFVVWGQLEKIGFGFDPVTNDFKVVRTLQFSPADNDDDDY DDDRNYSEEDEDEMTRSEVYSLRNDSWRKLDGGFAHALLYSIPDCQDGRFYWWDDDQEEGYTDFVSFDMTSEVFETIQVPNPAEMLSKFDIRSVSMVKGS AVAIFSDMETVEVANSMEIWMAMKLGGAWMKLWSIGNNLGMKCVHPVGMWRNGECFLQRYDNGELIVFNPETGDIRELKIEGEWQFFQLVPYAPSQIPLL DFS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06240			F-box family protein (.1)		Lus10001105 [exp]	0	1
AT3G11340		UGT76B1	UDP-dependent glycosyltransfer...		Lus10037268 [exp]	1.4	0.9663
AT4G36740	HD	HB-5, ATHB40	homeobox protein 40 (.1)		Lus10041719 [exp]	1.7	0.9628
AT2G24260	bHLH	LRL1, bHLH066	LJRHL1-like 1 (.1)		Lus10021846 [exp]	3.3	0.9469
AT1G11380			PLAC8 family protein (.1)		Lus10002586 [exp]	3.5	0.9618
AT1G63380			NAD(P)-binding Rossmann-fold s...		Lus10007038 [exp]	3.5	0.9654
AT2G37740	C2H2ZnF	ATZFP10, ZFP10	zinc-finger protein 10 (.1)		Lus10024362 [exp]	3.9	0.9594
AT1G29280	WRKY	ATWRKY65, WRKY6...	WRKY DNA-binding protein 65 (....		Lus10029252 [exp]	4.9	0.9592
AT3G47000			Glycosyl hydrolase family prot...		Lus10005871 [exp]	5.2	0.9479
AT2G39710			Eukaryotic aspartyl protease f...		Lus10004713 [exp]	5.5	0.9432
AT5G27600		LACS7, ATLACS7	long-chain acyl-CoA synthetase...		Lus10029918 [exp]	5.9	0.9527

Compare expression of checked genes

Lus10001105 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.