Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63280 221 / 1e-72 C2H2ZnF C2H2-like zinc finger protein (.1) AT5G40710 207 / 2e-67 C2H2ZnF zinc finger (C2H2 type) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014794 [exp] 303 / 2e-105 AT5G63280 257 / 3e-86 C2H2-like zinc finger protein (.1) Lus10032116 [exp] 196 / 8e-63 AT5G40710 289 / 3e-98 zinc finger (C2H2 type) family protein (.1) Lus10014570 [exp] 195 / 8e-63 AT5G40710 254 / 5e-85 zinc finger (C2H2 type) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G090300 [exp] 251 / 1e-84 AT5G63280 320 / 2e-110 C2H2-like zinc finger protein (.1) Potri.001G336500 [exp] 221 / 1e-72 AT5G40710 343 / 1e-119 zinc finger (C2H2 type) family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001106 pacid=23171899 polypeptide=Lus10001106 locus=Lus10001106.g ID=Lus10001106.BGIv1.0 annot-version=v1.0 ATGCCATTTGTGGAACAAGAAAGGTACCAGATTCCCACCAATTGCAGACTTCATCCTAGCAATGATCTGTTCAGGGATCAAGAGCAGCACAAGATTAATT ATGACTTTAACCAGTGGCAATGTGGATACTGTAAGAAAAGTTTCCGTGCTGAAACATATCTGGACCAGCATTTTGACAGCATGCACTTCGATCTTCTCAA TTTCACTGACATTAAGTGCTTAGCTGACATATGTGGTGCCTTGCACTGTGATTCTGTGATGGACTCTAAGTCAGTCAAAAAGATTAGATGCCACCCTGCC GCTGCTTCCAAGAATCGCCACCTTTGTGAGAGTCTCGCAGATAGTTGTTTTCCTCTTAATCTCGGCCGATCAGCTGCTCGCCTACATGATCTGTTTCTGC ACCAATTTTGTGATGCTCTGACATGCGCAGGAAAGAACAAACTTTTTCCTAAAGGTGGTAAGAACACCGGGTTTTATTTCCAGGTTAATGAAGCACACGA CGGAGGAGTCTCATACTTAAATCTCCACAACATGAAGATCACATCAACGTCTCTTTTGTTCAGCATGTTGACACTGCAGCGATGCAGCTGA
AA sequence Show only first row Show all	>Lus10001106 pacid=23171899 polypeptide=Lus10001106 locus=Lus10001106.g ID=Lus10001106.BGIv1.0 annot-version=v1.0 MPFVEQERYQIPTNCRLHPSNDLFRDQEQHKINYDFNQWQCGYCKKSFRAETYLDQHFDSMHFDLLNFTDIKCLADICGALHCDSVMDSKSVKKIRCHPA AASKNRHLCESLADSCFPLNLGRSAARLHDLFLHQFCDALTCAGKNKLFPKGGKNTGFYFQVNEAHDGGVSYLNLHNMKITSTSLLFSMLTLQRCS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G63280	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10001106 [exp]	0	1
AT1G20696		NFD3, NFD03, HM...	high mobility group B3 (.1.2.3...		Lus10012250 [exp]	2.4	0.8611
AT1G72650	MYB	TRFL6	TRF-like 6 (.1.2)		Lus10015664 [exp]	3.5	0.8448
AT2G42160		BRIZ1	BRAP2 RING ZnF UBP domain-cont...		Lus10006651 [exp]	7.5	0.8516
AT2G22720			SPT2 chromatin protein (.1.2.3...		Lus10011581 [exp]	8.5	0.8364
AT5G22120			unknown protein		Lus10004788 [exp]	9.6	0.7997
AT4G20310			Peptidase M50 family protein (...		Lus10001219 [exp]	11.5	0.8062
AT1G32810			RING/FYVE/PHD zinc finger supe...		Lus10001662 [exp]	13.1	0.8388
AT1G01020		ARV1	Arv1-like protein (.1.2)		Lus10010099 [exp]	17.4	0.7310
AT4G09140		ATMLH1	ARABIDOPSIS THALIANA MUTL-HOMO...		Lus10033274 [exp]	17.7	0.8312
AT1G69340			appr-1-p processing enzyme fam...		Lus10036809 [exp]	18.7	0.8251

Compare expression of checked genes

Lus10001106 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.