Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24420 154 / 6e-42 HXXXD-type acyl-transferase family protein (.1) AT5G47950 153 / 9e-42 HXXXD-type acyl-transferase family protein (.1) AT3G26040 149 / 7e-40 HXXXD-type acyl-transferase family protein (.1) AT4G15390 146 / 6e-39 HXXXD-type acyl-transferase family protein (.1) AT3G30280 135 / 6e-35 HXXXD-type acyl-transferase family protein (.1) AT1G24430 126 / 9e-32 HXXXD-type acyl-transferase family protein (.1) AT5G47980 106 / 6e-25 HXXXD-type acyl-transferase family protein (.1) AT5G23970 103 / 9e-24 HXXXD-type acyl-transferase family protein (.1) AT4G15400 91 / 2e-19 HXXXD-type acyl-transferase family protein (.1) AT1G03390 67 / 7e-12 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036077 [exp] 361 / 7e-121 AT1G24420 188 / 2e-54 HXXXD-type acyl-transferase family protein (.1) Lus10036126 [exp] 344 / 3e-114 AT3G26040 189 / 6e-55 HXXXD-type acyl-transferase family protein (.1) Lus10034600 [exp] 274 / 3e-87 AT3G30280 145 / 6e-39 HXXXD-type acyl-transferase family protein (.1) Lus10004441 [exp] 256 / 2e-80 AT3G26040 196 / 2e-57 HXXXD-type acyl-transferase family protein (.1) Lus10000319 [exp] 253 / 5e-79 AT3G26040 198 / 2e-58 HXXXD-type acyl-transferase family protein (.1) Lus10012759 [exp] 235 / 4e-72 AT3G26040 209 / 3e-62 HXXXD-type acyl-transferase family protein (.1) Lus10016353 [exp] 226 / 7e-69 AT3G26040 201 / 1e-59 HXXXD-type acyl-transferase family protein (.1) Lus10021387 [exp] 213 / 1e-63 AT3G26040 206 / 3e-61 HXXXD-type acyl-transferase family protein (.1) Lus10026013 [exp] 208 / 8e-62 AT3G26040 194 / 5e-57 HXXXD-type acyl-transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G033500 [exp] 198 / 4e-58 AT3G26040 290 / 3e-93 HXXXD-type acyl-transferase family protein (.1) Potri.002G010700 [exp] 195 / 4e-57 AT3G26040 306 / 3e-100 HXXXD-type acyl-transferase family protein (.1) Potri.011G124268 [exp] 191 / 1e-55 AT3G26040 281 / 2e-90 HXXXD-type acyl-transferase family protein (.1) Potri.011G124500 [exp] 191 / 1e-55 AT3G26040 281 / 2e-90 HXXXD-type acyl-transferase family protein (.1) Potri.011G124184 [exp] 190 / 2e-55 AT3G26040 278 / 5e-89 HXXXD-type acyl-transferase family protein (.1) Potri.011G124300 [exp] 190 / 2e-55 AT3G26040 278 / 5e-89 HXXXD-type acyl-transferase family protein (.1) Potri.008G034300 [exp] 190 / 3e-55 AT3G26040 280 / 1e-89 HXXXD-type acyl-transferase family protein (.1) Potri.011G124128 [exp] 190 / 3e-55 AT3G26040 282 / 1e-90 HXXXD-type acyl-transferase family protein (.1) Potri.011G124156 [exp] 189 / 6e-55 AT3G26040 284 / 2e-91 HXXXD-type acyl-transferase family protein (.1) Potri.005G250500 [exp] 182 / 3e-52 AT3G26040 304 / 3e-99 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10001107 pacid=23148496 polypeptide=Lus10001107 locus=Lus10001107.g ID=Lus10001107.BGIv1.0 annot-version=v1.0 ATGGTAAAGCCAACAGCGAGACAATTTCTTGACGATGCTGTGCCGCCTTTCAAATTGTGCCTCATCGACCAGCTGGCATCAAGACATTACTTCGGAGCTG TCCTTTTCTACGGCGCCAATCAAGTACTGAACAAAAACGACACAACAAAGCTGCTAAAGGCAACACTCTCCAAGGCACTCAATTCATTCTACCCACTCTC CGGCAGAGTGAAGCAGAATCTCACGGTGGAGGAGTTCCAAACCGGGGTTCCGTTCACTGAAACTCGGGTCGATAATCGCCTCTCCGATTTCCTCCGAAAT CCCAGCTTGGCATTCATCAACCACTTGTTCCCTCTAGAACCTAGTTGTCTCATCAGTACTACTACTACTACAACATCCGATGATGGTCAACCTTCCCTGC CGCCGCTTTTGCTTGTTCAAGTCAACGTGTTTGGTTGCGGTGGGATTGCTATTGGTTTGTCTTTTAATCACAAGATTTCGGATGGTGCCACCGCTGACAT TTTCCTCAAGCATTGGACACTACTTTGTAGCAGTACTACTGCTGAGGGTGATGGTTTTGTTGAAATGTCACAACAAGGCTCCTCTGTTTTTCCTCCCCGG GAATTGATTCCTTCCGAGGTCCTGTCTATAGCCGACGATTGGTTCCAGGATGATCGTAATTCGAGCACCAAGAGATTTGTGTTCGATGCCAATGCGGTGG CTGAGTTGAAATCAAGTAGTAAGAGTATCCAAGTCGACAACCCAACTAGAAACGAAGCAATATCAGCTTTCATTTGGAGATCCGTTATTAGAGCTGCCAC ATCAGCAGCTACCAAGTCATCTCCTCCTCCTCAGCTACTGGTCCAACCTGTCAACATACGACGGCGTATGAACTTGTCCGACACCAGTTTTGGAAATCTC CTCTCAACAGCAGCAACATCTTACCCCCAAGGTCAAATCACCACCACCACCACCACGAGTGACTTGGTTCAGCTGATGCGTGCTGATGTGGCGAGAGTCG ACCAAAAGTCCATTCTAGCTGTATCCAGAGACGAAGGGTTCGAAGCCATGGTTGAAGGTTGGAAGCAGTTTCGAGAGCTAGGACAACAGGTGCTGACTTG TTCGAGCTGGATAAGGTTCTTTAGCGATGCTGACTTTGGGTGGGGGAAGCCAGCGTGGACTAGTGTGCTCGGTGAAGCTAGCGGGAATTACCCTACTTGT GGTAATTTAGTAATTCTCACTGAAAACAATTCATCAAACGGGGGAGACGGCGGCATCGAGGCTTGCATCAGATTGGATGTCGATGTGATGGATGTTCTTC AGCAAGATTCCGAGTTCCTCGAATTCGCTTCTCTCAATCCTCCTATAGCACTAATTTTGGATTAA
AA sequence Show only first row Show all	>Lus10001107 pacid=23148496 polypeptide=Lus10001107 locus=Lus10001107.g ID=Lus10001107.BGIv1.0 annot-version=v1.0 MVKPTARQFLDDAVPPFKLCLIDQLASRHYFGAVLFYGANQVLNKNDTTKLLKATLSKALNSFYPLSGRVKQNLTVEEFQTGVPFTETRVDNRLSDFLRN PSLAFINHLFPLEPSCLISTTTTTTSDDGQPSLPPLLLVQVNVFGCGGIAIGLSFNHKISDGATADIFLKHWTLLCSSTTAEGDGFVEMSQQGSSVFPPR ELIPSEVLSIADDWFQDDRNSSTKRFVFDANAVAELKSSSKSIQVDNPTRNEAISAFIWRSVIRAATSAATKSSPPPQLLVQPVNIRRRMNLSDTSFGNL LSTAATSYPQGQITTTTTTSDLVQLMRADVARVDQKSILAVSRDEGFEAMVEGWKQFRELGQQVLTCSSWIRFFSDADFGWGKPAWTSVLGEASGNYPTC GNLVILTENNSSNGGDGGIEACIRLDVDVMDVLQQDSEFLEFASLNPPIALILD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10001107 [exp]	0	1
AT3G26300		CYP71B34	"cytochrome P450, family 71, s...		Lus10031674 [exp]	1.0	0.9530
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10000319 [exp]	2.4	0.8789
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10004441 [exp]	3.2	0.9139
AT5G51780	bHLH	bHLH036	basic helix-loop-helix (bHLH) ...		Lus10027394 [exp]	5.7	0.8991
AT5G51780	bHLH	bHLH036	basic helix-loop-helix (bHLH) ...		Lus10031676 [exp]	8.0	0.8933
AT3G12540			Protein of unknown function, D...		Lus10040290 [exp]	12.6	0.8148
AT4G00170			Plant VAMP (vesicle-associated...		Lus10010360 [exp]	16.6	0.8460
AT2G20080			unknown protein		Lus10012982 [exp]	18.8	0.8808
					Lus10043467 [exp]	19.4	0.8126
					Lus10041677 [exp]	19.8	0.8414

Compare expression of checked genes

Lus10001107 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.