Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06620 346 / 5e-118 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G59530 344 / 3e-117 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G59540 340 / 9e-116 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT1G06650 330 / 2e-111 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT1G04350 326 / 4e-110 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G06640 325 / 2e-109 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) AT3G61400 321 / 5e-108 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G03410 318 / 1e-106 2A6 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G30840 317 / 2e-106 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G43450 315 / 5e-106 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019435 [exp] 570 / 0 AT1G06620 357 / 3e-122 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10002892 [exp] 491 / 6e-175 AT1G06620 381 / 1e-131 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10000426 [exp] 468 / 7e-166 AT1G06620 412 / 5e-144 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10001118 [exp] 468 / 7e-166 AT1G06620 412 / 5e-144 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10001109 [exp] 443 / 4e-156 AT1G06620 379 / 4e-131 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10002888 [exp] 431 / 3e-151 AT1G06620 384 / 7e-133 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10002894 [exp] 406 / 3e-140 AT1G06620 369 / 2e-125 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10021943 [exp] 398 / 4e-138 AT1G06620 443 / 5e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10037796 [exp] 389 / 7e-135 AT1G06620 442 / 4e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G073300 [exp] 377 / 5e-130 AT1G06620 455 / 7e-161 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G073166 [exp] 372 / 2e-128 AT1G06620 470 / 7e-167 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G073232 [exp] 353 / 5e-121 AT1G06620 402 / 7e-140 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G073100 [exp] 339 / 3e-115 AT1G06650 414 / 2e-144 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.008G165400 [exp] 326 / 5e-110 AT1G06620 444 / 1e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.011G156200 [exp] 322 / 2e-108 AT1G06650 430 / 7e-151 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.013G045000 [exp] 300 / 9e-100 AT1G06620 369 / 6e-127 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.005G222300 [exp] 298 / 4e-99 AT1G06620 340 / 3e-115 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.017G135800 [exp] 298 / 1e-98 AT1G06620 323 / 1e-108 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.017G136000 [exp] 292 / 9e-97 AT1G06620 314 / 2e-105 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10001108 pacid=23148499 polypeptide=Lus10001108 locus=Lus10001108.g ID=Lus10001108.BGIv1.0 annot-version=v1.0 ATGGTTTCCACAACAGTCGATTATGATCGAGATGCTGAACTCAAGGCATTCGACGAAACAAAAGCCGGAGTGAAAGGGCTTGTTGATTCGGGGATCACAG AGATCCCTCGAATCTTTCACATGCCATCTCATTTGCTGGACCAAGGATTGCCCTTTCCAGCAGACGACCCAGACTTCCTTTTCCCAATCATAGATCTGCA GGACGGCCAAAACCCGGAGAAGCGGAAGCAGATTGTTGAGAAAATCGGGGACGCGGCCAAAAACTGGGGCTTCTTCCAAATAGTGAACCATGGAACACCT ATAGAAATCCTGGAGGAGATGATAGCAGGAGTCCACAGGTTCTTTAACCAAGATGTCGAGCTGAAGAAGAAAGTGGGTGTGGACATGACCAAGGAGGTTG TTTACTACCCAAGCAATCCTGATCTCTACACCTCAGAAGCTGCAAATTGGAGGGATTCCATCCTCTATCGCATGACACCAAACCCACCTGAAGCAGAGCG ATTGCCGGCTTGCTCCAGGGAAATCGTGCCCAAGTATTCGGCTGAAATGCTGAAATTGGGGGATTTGGTTTTCCAGTTGCTGTCTGAGTCTTTGAGTCTA CCCTCGGATTACCTCAAAGAATTGGATTGTATGGAAGTACTGGCATTAGGGTGCCATTACTATCCAGCTTGTCCTCAGCCAAAACTCACCTTGGGAACTA TCGGCCATGCTGATCTTGATTTTCTTACGCTTCTTCTGCAAGACAACGTCGGAGGTCTTCAGATCCGTCGCAAGGGTCATTGGGTCGATGTGCCTTTTAC TAAAGGAGCCATAGTAGTCAACATCGGAGAGATGCTTCAGCTTCTATCCAACGACAAGTTCACAAGTGTAGAGCATAGAGTGATAGCGAAAGATGTTGGC CCGCGGGTGTCAATAGCAGGGTTTTTCGGCAATGGGTTCTCGCTTAAGTCCAGAATGTATGGACCCATCAAAGAGACATTATCTGAAGACAACCCTCCAT TATATAAGAACATCACAATCAAAGATTTCTTTGCCCTGACCTTTAAAAACGGCATTGGTAAATCAGTTCTGCCACTCCTTAAGCTCTGA
AA sequence Show only first row Show all	>Lus10001108 pacid=23148499 polypeptide=Lus10001108 locus=Lus10001108.g ID=Lus10001108.BGIv1.0 annot-version=v1.0 MVSTTVDYDRDAELKAFDETKAGVKGLVDSGITEIPRIFHMPSHLLDQGLPFPADDPDFLFPIIDLQDGQNPEKRKQIVEKIGDAAKNWGFFQIVNHGTP IEILEEMIAGVHRFFNQDVELKKKVGVDMTKEVVYYPSNPDLYTSEAANWRDSILYRMTPNPPEAERLPACSREIVPKYSAEMLKLGDLVFQLLSESLSL PSDYLKELDCMEVLALGCHYYPACPQPKLTLGTIGHADLDFLTLLLQDNVGGLQIRRKGHWVDVPFTKGAIVVNIGEMLQLLSNDKFTSVEHRVIAKDVG PRVSIAGFFGNGFSLKSRMYGPIKETLSEDNPPLYKNITIKDFFALTFKNGIGKSVLPLLKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10001108 [exp]	0	1
AT2G18150			Peroxidase superfamily protein...		Lus10028337 [exp]	2.2	0.9627
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Lus10006978 [exp]	3.5	0.9527
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10028897 [exp]	4.5	0.9475
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Lus10007248 [exp]	4.5	0.9546
AT1G19130			unknown protein		Lus10027661 [exp]	6.0	0.9393
AT1G05030			Major facilitator superfamily ...		Lus10035315 [exp]	7.5	0.9399
AT3G01980			NAD(P)-binding Rossmann-fold s...		Lus10041545 [exp]	7.9	0.9275
AT5G25140		CYP71B13	"cytochrome P450, family 71, s...		Lus10018263 [exp]	9.2	0.9402
AT4G20140		GSO1	GASSHO1, Leucine-rich repeat t...		Lus10036251 [exp]	11.0	0.9397
					Lus10002465 [exp]	11.0	0.9451

Compare expression of checked genes

Lus10001108 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.