Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06620 380 / 3e-131 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G06650 360 / 1e-123 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT5G59530 355 / 1e-121 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G06640 352 / 4e-120 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) AT1G06645 350 / 2e-119 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G30840 347 / 3e-118 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G59540 347 / 3e-118 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT1G04350 345 / 7e-118 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G43450 345 / 8e-118 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G43440 342 / 3e-116 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000426 [exp] 530 / 0 AT1G06620 412 / 5e-144 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10001118 [exp] 530 / 0 AT1G06620 412 / 5e-144 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10002892 [exp] 494 / 3e-176 AT1G06620 381 / 1e-131 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10017701 [exp] 472 / 4e-168 AT1G06620 346 / 2e-118 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10002894 [exp] 468 / 2e-164 AT1G06620 369 / 2e-125 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10002888 [exp] 458 / 4e-162 AT1G06620 384 / 7e-133 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10001108 [exp] 457 / 9e-162 AT1G06620 362 / 2e-124 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10021943 [exp] 451 / 5e-159 AT1G06620 443 / 5e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10019435 [exp] 429 / 1e-150 AT1G06620 357 / 3e-122 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G073166 [exp] 414 / 9e-145 AT1G06620 470 / 7e-167 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G073300 [exp] 385 / 2e-133 AT1G06620 455 / 7e-161 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G073232 [exp] 382 / 2e-132 AT1G06620 402 / 7e-140 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.008G165400 [exp] 363 / 8e-125 AT1G06620 444 / 1e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G073100 [exp] 357 / 4e-122 AT1G06650 414 / 2e-144 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.011G156200 [exp] 342 / 3e-116 AT1G06650 430 / 7e-151 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.013G045000 [exp] 323 / 6e-109 AT1G06620 369 / 6e-127 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.017G135800 [exp] 311 / 4e-104 AT1G06620 323 / 1e-108 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.002G040700 [exp] 303 / 5e-101 AT1G06620 330 / 2e-111 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.005G222300 [exp] 296 / 2e-98 AT1G06620 340 / 3e-115 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10001109 pacid=23148501 polypeptide=Lus10001109 locus=Lus10001109.g ID=Lus10001109.BGIv1.0 annot-version=v1.0 ATGGCCGCTTATGATCGACTTGCAGAGCTCAAGGCATTCGAAGCAACAAAAGCCGGAGTCAAAGGCTTAGTAGATTCCGGAATCACAGAGATCCCACGAA TGTTCCACATGCCGAAACATTTCCTGGACCCAGGACTTCCGTTTTCAGCACAAGACCCAAACTTCACTTTCCCAATCATAGACCTGCAAGGTGTATCAGG AGGCCGAGATCCCGAGAAGCGGAAGCAGATTGTTGATCAAATTAGGGACGCTGCCGAAAATTGGGGATTCTTCCAAATACTGAATCATGGAGTCCCGGCA AACATCATGGAAGAGATGAATGCGGGAGTCCACAGGTTCTTCGACATGGACGTCGAGCAGAAGAAGGAGTTTTATGGGTATGGCTCCACCAAGAAGGTTA ACTACGTCAGTAACTTCGATTTGTACAATCAACCTGCTGCAGTCTGGAGCGACGCAATCCTGTACCAGATGACACCCGATCTCCCAAAGCCGGAGCAAAT GCCGGTTTGCACTAGGGAGATCGTGCCCAAGTATACAGAGGAAATCAGGAAACTGGCGGATTTCCTTTTCCAGTTGCTGTCTGAGTCACTGGGTCTCCCC CCAAATCACTTGAAGGATATGGATTGCCTGGACGTGATGGGATTAACCTGCAATTACTACCCAGCTTGTCCTCAACCGGAACTCACCCTCGGAACTTTCC GGCATGCGGATCTGTATTTCCTCACGATTATATTGCAGGATCACATTGGAGGTCTTCAAATTCTTCGACAGAACCACTGGATCGATGTTCCCTATACCCC TGGAAGTCTGGTGGTCAACGTTGGAGATTTGCTTCAGCTTATAACCAACGATAAGTTCAAAAGTATTGTGCATAGAGTGAGAGTCAAACGTAACGGGCCC AGAGCATCAATTGCTGCTTTTTTCGGACATTCATCTTCCACGTCTCCAAGACTGTATGGACCCATACCAGAGTTGCTCTCAGAAGACAATCCTCCAAAAT ACAAGGAAATAACAATCCGAGATTTCTCTGTTCGATCCTACGCAAATGGATATGGCGGCAACTCTCTTCTGCCACAGCTTCAGCTCTGA
AA sequence Show only first row Show all	>Lus10001109 pacid=23148501 polypeptide=Lus10001109 locus=Lus10001109.g ID=Lus10001109.BGIv1.0 annot-version=v1.0 MAAYDRLAELKAFEATKAGVKGLVDSGITEIPRMFHMPKHFLDPGLPFSAQDPNFTFPIIDLQGVSGGRDPEKRKQIVDQIRDAAENWGFFQILNHGVPA NIMEEMNAGVHRFFDMDVEQKKEFYGYGSTKKVNYVSNFDLYNQPAAVWSDAILYQMTPDLPKPEQMPVCTREIVPKYTEEIRKLADFLFQLLSESLGLP PNHLKDMDCLDVMGLTCNYYPACPQPELTLGTFRHADLYFLTIILQDHIGGLQILRQNHWIDVPYTPGSLVVNVGDLLQLITNDKFKSIVHRVRVKRNGP RASIAAFFGHSSSTSPRLYGPIPELLSEDNPPKYKEITIRDFSVRSYANGYGGNSLLPQLQL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10001109 [exp]	0	1
AT3G26210		CYP71B23	"cytochrome P450, family 71, s...		Lus10012767 [exp]	1.4	0.9534
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10003451 [exp]	1.7	0.9232
AT3G29250		AtSDR4	short-chain dehydrogenase redu...		Lus10022562 [exp]	3.5	0.9322
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10001118 [exp]	4.2	0.9053
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10002892 [exp]	4.5	0.9154
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10000426 [exp]	4.6	0.9051
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Lus10004443 [exp]	5.7	0.9009
AT3G26770			NAD(P)-binding Rossmann-fold s...		Lus10016177 [exp]	6.0	0.8716
AT3G18970		MEF20	mitochondrial editing factor ...		Lus10006589 [exp]	6.2	0.8819
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10036079 [exp]	7.7	0.8674

Compare expression of checked genes

Lus10001109 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.