Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25810 357 / 2e-116 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT4G16730 338 / 7e-110 AtTPS02 terpene synthase 02 (.1) AT4G16740 325 / 1e-104 ATTPS03 terpene synthase 03 (.1.2) AT3G25830 324 / 9e-104 ATTPS-CIN "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) AT3G25820 324 / 9e-104 ATTPS-CIN "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1.2) AT2G24210 318 / 3e-101 AtTPS10 terpene synthase 10 (.1) AT1G61680 231 / 2e-68 ATTPS14 terpene synthase 14 (.1.2) AT1G70080 213 / 1e-61 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT5G23960 211 / 2e-61 ATTPS21 terpene synthase 21 (.1.2) AT3G14490 206 / 7e-59 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038179 [exp] 783 / 0 AT3G25810 351 / 2e-113 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10025922 [exp] 765 / 0 AT3G25810 353 / 3e-114 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10033643 [exp] 532 / 0 AT4G16730 356 / 2e-115 terpene synthase 02 (.1) Lus10006356 [exp] 419 / 3e-140 AT3G25820 371 / 3e-121 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1.2) Lus10012312 [exp] 408 / 7e-136 AT4G16740 363 / 3e-118 terpene synthase 03 (.1.2) Lus10006355 [exp] 397 / 2e-131 AT2G24210 361 / 7e-117 terpene synthase 10 (.1) Lus10031352 [exp] 354 / 2e-119 AT3G25810 236 / 2e-73 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10018500 [exp] 328 / 3e-105 AT4G16740 419 / 1e-140 terpene synthase 03 (.1.2) Lus10018501 [exp] 313 / 5e-99 AT4G16740 413 / 1e-137 terpene synthase 03 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G023006 [exp] 397 / 4e-132 AT3G25830 540 / 0.0 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.019G023008 [exp] 393 / 4e-131 AT3G25830 535 / 0.0 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.017G041700 [exp] 393 / 1e-130 AT3G25810 432 / 3e-145 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.007G118600 [exp] 375 / 2e-123 AT4G16740 462 / 3e-157 terpene synthase 03 (.1.2) Potri.019G022338 [exp] 367 / 1e-120 AT3G25830 483 / 8e-165 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.001G308300 [exp] 361 / 4e-118 AT3G25830 507 / 4e-174 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.001G308200 [exp] 360 / 8e-118 AT3G25810 499 / 4e-171 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.007G119700 [exp] 349 / 1e-112 AT4G16740 438 / 8e-147 terpene synthase 03 (.1.2) Potri.011G031800 [exp] 323 / 1e-103 AT3G25830 382 / 5e-126 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.019G023020 [exp] 307 / 3e-100 AT3G25830 440 / 1e-151 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01397 [flax] [poplar] Terpene_synth Terpene synthase, N-terminal domain CL0613 [flax] [poplar] Terp_synthase PF03936 [flax] [poplar] Terpene_synth_C Terpene synthase family, metal binding domain
Representative CDS sequence Show only first row Show all	>Lus10001110 pacid=23148494 polypeptide=Lus10001110 locus=Lus10001110.g ID=Lus10001110.BGIv1.0 annot-version=v1.0 ATGTCGAACACAAAGCTAAGTCTCCAACATTTTATGCCACGTGTTTTGTTGCTATTGTGTCATAGGCCTTTTTCACCAAGTAAATGGAGAAGGGTGGAAG AGTTGGAAAAGTACTTGAAAGGTTTGCTGGAAGAGAATAGAAGACGAGAAGATGATGATGATGGTGAAAGGCTGGAGATGATTGACAATCTGCAACGCCT TGGTTTGGCTCACCATTTCGAACCACAACTTCACAAAGCGTTTCAGGCAATCGCAGAAGATGATCACAACCCTCGTCAACATCACCTTTATACTTGTGCC CTCCGCTTTCGGCTACTCAGGCAGGCCGGATTCGCTGTCTCTCAAGATGTATTCAGTAACTTGAGAGATGAACAGGGAAGATTCAAGGAAGAAATTTCGA CCGACATTAAAGGGTTGTTAGCCTTGTACGAAGCGTCCCATGTCGGAGTATCAGGGGAAGAAGATCATATGTTGGATGAGGCCAGGGCATTTGCTGTTAA GCATTTAAAAAACGCTGTTATCGATGACGACGAGCAATTAGACCCCATCTTGGCCAAGAAAGTGCGGCACGCTTTGGAGCTTCCATTGCACTGGCGATCC CGTTGGGCCGAAACGTGCTGGTTACTTCACCTATTCCAAACGTCTCAACCATCATCGCCTCTGCTCGAGCTGGCCTTGTTAGATTTCAACAATATCCAGA AAGTACACATGGAGGAGCTAGAGGAACTCACTAGTTGGTGGAAAGATTTGGGACTGATGGAAGGAGCCGAGTTCGCTCGAGATGCTATGGTCGAGAGTTA CTTATGGAGCATCTCGGCAAGCGCTGACCCCAAATTGAGCACCTTGAGGAAAGCAACCGCTAAAGTTGCTGTCATTGTTCACATTCTCGACGATGCGTAC GATGTTTATGGCTTCTTACCTGAACTCGAGCTCTTCACTTCGGCCATCGAGAGGTGGGATATCAACGACCTTGATAAGCTGCCTCGCTACCTGCAGTTGT GCTTCCTGGCTGTATACAATCTTGGGAATGAAATGGCTTATGCCAACTTAAAACAACAGGGATTCAACAGTTTACCTTACATTAAGAAATCGTGGGCGGA TCTATGCCATTCGTACTTAGAGGAAGCAAGGTGTTACCATTCTCGACGTGACCAGACATTCGAGCAGTATTTGAAGGTTGCATGGAAATCAGTAGCCTGC GCTATTGTACTCATTCAAGGCTATCTCTCAATGCCAGGCGAAACATTGAAGGATGAGACTTTGGATCACATTTTTAAGGCCGACCTTACACGCTTGACTT CAATCATCGTTCGATTGATCAACGATATTGCTAGCTCCAAGGGTGAGCTAGAGAGGGGAGATGTGCTTAAATCGGTGGAATGCTACATGAAGGAGAAAGG AGTTTCAGAACAAGTTGCTAGAGACCATATAGAGAAGTTAATTGGGGAGACATGGAAAATGCTGAATCAAGAAATCGTTGGCGCGTCAGATGATTCGTCT CTGATTCCAAAAAGCTTCGTGACGATGGCAGTAGATGTGGTTCGAGCTAGCCACTTCATGTATAAACACAGGGAGTCTAGAGCATCGTCATCTTCTGGTT CTAAGGATCAAGCAGATACCATGCCTCTACTTTCCCATTCATGA
AA sequence Show only first row Show all	>Lus10001110 pacid=23148494 polypeptide=Lus10001110 locus=Lus10001110.g ID=Lus10001110.BGIv1.0 annot-version=v1.0 MSNTKLSLQHFMPRVLLLLCHRPFSPSKWRRVEELEKYLKGLLEENRRREDDDDGERLEMIDNLQRLGLAHHFEPQLHKAFQAIAEDDHNPRQHHLYTCA LRFRLLRQAGFAVSQDVFSNLRDEQGRFKEEISTDIKGLLALYEASHVGVSGEEDHMLDEARAFAVKHLKNAVIDDDEQLDPILAKKVRHALELPLHWRS RWAETCWLLHLFQTSQPSSPLLELALLDFNNIQKVHMEELEELTSWWKDLGLMEGAEFARDAMVESYLWSISASADPKLSTLRKATAKVAVIVHILDDAY DVYGFLPELELFTSAIERWDINDLDKLPRYLQLCFLAVYNLGNEMAYANLKQQGFNSLPYIKKSWADLCHSYLEEARCYHSRRDQTFEQYLKVAWKSVAC AIVLIQGYLSMPGETLKDETLDHIFKADLTRLTSIIVRLINDIASSKGELERGDVLKSVECYMKEKGVSEQVARDHIEKLIGETWKMLNQEIVGASDDSS LIPKSFVTMAVDVVRASHFMYKHRESRASSSSGSKDQADTMPLLSHS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G25810			Terpenoid cyclases/Protein pre...		Lus10001110 [exp]	0	1
AT5G25120		CYP71B11	"ytochrome p450, family 71, su...		Lus10013194 [exp]	1.0	0.9425
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10026237 [exp]	2.0	0.9090
AT3G25810			Terpenoid cyclases/Protein pre...		Lus10025922 [exp]	2.8	0.8825
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10036078 [exp]	3.0	0.9074
AT3G48310		CYP71A22	"cytochrome P450, family 71, s...		Lus10027397 [exp]	3.0	0.8253
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10036079 [exp]	4.5	0.8597
					Lus10005608 [exp]	4.9	0.8561
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10036126 [exp]	5.9	0.8493
AT2G17120		LYM2	lysm domain GPI-anchored prote...		Lus10026372 [exp]	8.0	0.7771
AT5G40780		LHT1, LTH1	lysine histidine transporter 1...		Lus10014605 [exp]	8.1	0.7628

Compare expression of checked genes

Lus10001110 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.