Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18980 949 / 0 ARM repeat superfamily protein (.1) AT3G06210 898 / 0 ARM repeat superfamily protein (.1) AT4G14280 721 / 0 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034018 [exp] 1531 / 0 AT5G18980 1065 / 0.0 ARM repeat superfamily protein (.1) Lus10042594 [exp] 158 / 2e-45 AT5G18980 117 / 3e-32 ARM repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G029300 [exp] 1067 / 0 AT5G18980 1039 / 0.0 ARM repeat superfamily protein (.1) Potri.008G200500 [exp] 1035 / 0 AT5G18980 1009 / 0.0 ARM repeat superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001111 pacid=23148491 polypeptide=Lus10001111 locus=Lus10001111.g ID=Lus10001111.BGIv1.0 annot-version=v1.0 ATGGACGGCGGCACAGCTGAAGAAGGAAGCAACGGCAACAGCAACAGCATTCACCTGGAGCTCCGCCGCCTCAGCGAAATCTATGGCTCCACCCCAACTA TTTTCGAGCCTCAAATCAGCGGCGGGGGAGTTGAGAAGAGAGACAGCAGCACCGCCAATTCATTCTCCCCTACGACGACGAAAATTACTAGCGGAGGAGG AGCCCCTGAGAAGAAACTTACTCTGTTCGCCCTCCGCCTCGCCGTCCTCGAAAAAGCCGCCACTAGTTTGGGAACCCTTGGATTCATCTGGGCCACCGTC GTTCTCCTCGGTGGCTTTGCCATCACTCTCGACAAGACAGATTTCTGGCTTATCACCATCATACTCCTCATCGAAGGTGCCCTCATTTTCAGCCGCAGCC ACGAGCTCGAGTGGCAGCACCAAGCCACCACTTGGTCCTTCTCAGACGCCCGAATCAACAGCTTCAAAGCAATTAAATCCACCTCCCATTTCCTCGTCCA ATTCTTCAACGCAATTCTCCGCCCAATTTATCCAGCCCAGAAACAGAGTTCAGAATCAAACCCACTGCCAAGGTCCTGGCACCATAGGCAGAATAAGAAA GCTACCACGACGTACCGAACATGGACGAGCTCAGACGTTCCGATTCTTCCCTACGGGAGATGGGTTTTCCTTTCGAGAAACATTAGCAAGCTCTTCTATT GGCTTCAACTCGGATCAGCAACGGCCTGCGTTGTTCTGTCACTTATGAAGCTGATCAAGCACAATTATGGCGAGGTATCAAAGGGGGACACCGATAAGAG AAACAGGAAAGCTGCATTAACGATTTTTTACTCCCTGGCGCTGGCAGAAGCCCTGCTTTTTCTAATGGAGAAGGCCTACTGGGAATGGAAAGTGATTTAC TGCAGGATCTTGGAACAGGTGAATCAGGAATGTGAATTGGGTCCCTCGGGGATGATCTCCATCAAGAGATTCTTCTACGACGCTTACTCCAAGTCTGTTA ACGGCAGCATTTTTGACGGATTGAAGATGGATATCGTTTCGTTTTCCATGGAACTTCTAGCTTCTACCTCTCCGGACGAACAGCTCATCGGGGTTCGAGT CCTGCGCCAGTTCGCCGTCAGTGAGAGATTCTCCAAAGACACGCTACAGAAGATCGGAGTGAACGTATCGGTGGTGGAGAGGTTGGTGGAGATGTTGAAT TGGAAAGATTTACTAGAGGAGGAGGTCCGGAGGTCAGCAGCCGAAATCCTGTCGAATCTAGCCGGAAAGAAGCAGAATTCGTTGAGGGTTGCTGGGACAC CGGGAGCAATGGAATCAATCTCTTCATTGCTTCAGACCAATAGGGCTTCGAGCAGTTCCGCTGACGAGGTTGGGGAGAAAAAGATCATATTCGACCGTCT GAATTATGGGTTTTGGACGTTTAACCATTTGGGACTTGTAATCCTGAAGAAGCTAGCTAGGGATCATGACAACTGTGGCAAGATTGGCAACACAAGAGGC CTACTCCCCAAAATCATTGATTTCACCCATGCCGGGGAGAAATTACTTCGAGATGAAAATGCTTCAGCTTCACATTCGCAAATCCTGACGGTGAAAAGAT CTCTCCAGGTTGTCAAAATGCTAGCGAGCACCACGGGGAACACCGGGAAACAGCTGAGGAAAGAGATCTCGGAAGTGGTTTTCACGATCAGTTATATTAG AGACATTCTGAGGTATGGAGAGAAGCATCCGATGCTGCAGAAACTGAGCATAGAGATCCTGACGAGCTTGGCGCTCGAAGAAGAGGCCAGTGAGAGGATC GGAGGGACTGGCGGGATCCTCAAGGAGCTGTTTAACATTTTCTTTAACCAAGGAGGAGATAATGACGAGATTCGTCAAAGACATGTGAGGGTTGCTGCCG GAGAAGCTCTGGCGATGCTGGCTTTGGAGAGCAAGAATAACTGCCAAAGGATTTTGAAGCTTAAGGTGCTTGACAAGCTTGTTGCTGCTCTTGAGGTTCC TGTGATGCGAGTGAATGCTGGTAGGATCCTGAGGAACTTGTGCATTTACAGTGGTCCTGACAACTTTTATCCGCTCAAAGGAGTGCTTAGAGCAATCACA TCGGAAGAGAAGAAACTGCAGGAAGTGATGGTGGGACTAGCTGCAGAAGCTTTCAAGTACATGAACTCTCAGGAATCAAGGTTGATGTTTGAGAGAGCTG GAATGAGTGAAGATGAATTTGCAAACGTAATCGTAAAAATCCTAAGAAAGTACGCAGACCCACCTGCAAAAGTGCCAAGAATAAGGAGGTTTTGCATAGA GGTAGCCATTTGGATGATGAAGGAAAGCAAAGCAAACGCAGCCATTTTCAGAAATCTTGGCCTGGACAAGGACAGGGACCTGGACTGTGTAATGGAAACT ACCTCTGAACTCGAGAGCTTCAACATCTTCTCTGGAACGGTTGGACTGAGCCGTTACACCATAAGTATTCACTCGTTGGTTGAAACTGCGATTGGTTTGC TTGCGGAGGAAGAGGATAATCAACGCTAA
AA sequence Show only first row Show all	>Lus10001111 pacid=23148491 polypeptide=Lus10001111 locus=Lus10001111.g ID=Lus10001111.BGIv1.0 annot-version=v1.0 MDGGTAEEGSNGNSNSIHLELRRLSEIYGSTPTIFEPQISGGGVEKRDSSTANSFSPTTTKITSGGGAPEKKLTLFALRLAVLEKAATSLGTLGFIWATV VLLGGFAITLDKTDFWLITIILLIEGALIFSRSHELEWQHQATTWSFSDARINSFKAIKSTSHFLVQFFNAILRPIYPAQKQSSESNPLPRSWHHRQNKK ATTTYRTWTSSDVPILPYGRWVFLSRNISKLFYWLQLGSATACVVLSLMKLIKHNYGEVSKGDTDKRNRKAALTIFYSLALAEALLFLMEKAYWEWKVIY CRILEQVNQECELGPSGMISIKRFFYDAYSKSVNGSIFDGLKMDIVSFSMELLASTSPDEQLIGVRVLRQFAVSERFSKDTLQKIGVNVSVVERLVEMLN WKDLLEEEVRRSAAEILSNLAGKKQNSLRVAGTPGAMESISSLLQTNRASSSSADEVGEKKIIFDRLNYGFWTFNHLGLVILKKLARDHDNCGKIGNTRG LLPKIIDFTHAGEKLLRDENASASHSQILTVKRSLQVVKMLASTTGNTGKQLRKEISEVVFTISYIRDILRYGEKHPMLQKLSIEILTSLALEEEASERI GGTGGILKELFNIFFNQGGDNDEIRQRHVRVAAGEALAMLALESKNNCQRILKLKVLDKLVAALEVPVMRVNAGRILRNLCIYSGPDNFYPLKGVLRAIT SEEKKLQEVMVGLAAEAFKYMNSQESRLMFERAGMSEDEFANVIVKILRKYADPPAKVPRIRRFCIEVAIWMMKESKANAAIFRNLGLDKDRDLDCVMET TSELESFNIFSGTVGLSRYTISIHSLVETAIGLLAEEEDNQR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G18980			ARM repeat superfamily protein...		Lus10001111 [exp]	0	1
AT5G18980			ARM repeat superfamily protein...		Lus10034018 [exp]	1.4	0.9480
AT1G20180			Protein of unknown function (D...		Lus10017286 [exp]	1.4	0.9065
AT2G16980			Major facilitator superfamily ...		Lus10004157 [exp]	1.7	0.9053
AT1G31550			GDSL-like Lipase/Acylhydrolase...		Lus10024085 [exp]	3.5	0.9044
AT4G33090		ATAPM1, APM1	aminopeptidase M1 (.1)		Lus10025002 [exp]	4.2	0.8898
AT4G17980	NAC	ANAC071	NAC domain containing protein ...		Lus10030978 [exp]	4.5	0.8691
AT1G75810			unknown protein		Lus10033134 [exp]	6.6	0.8640
AT3G14360			alpha/beta-Hydrolases superfam...		Lus10003925 [exp]	7.0	0.8866
AT3G08860		PYD4	PYRIMIDINE 4 (.1)		Lus10009086 [exp]	7.2	0.8634
AT5G14280	GeBP		DNA-binding storekeeper protei...		Lus10036981 [exp]	7.7	0.8635

Compare expression of checked genes

Lus10001111 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.