Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14090 59 / 8e-11 ATEXO70D3 exocyst subunit exo70 family protein D3 (.1) AT1G72470 54 / 7e-09 ATEXO70D1 exocyst subunit exo70 family protein D1 (.1) AT1G54090 47 / 8e-07 ATEXO70D2 exocyst subunit exo70 family protein D2 (.1) AT5G50380 40 / 0.0004 ATEXO70F1 exocyst subunit exo70 family protein F1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008126 [exp] 142 / 4e-40 AT1G72470 862 / 0.0 exocyst subunit exo70 family protein D1 (.1) Lus10016764 [exp] 41 / 0.0002 AT5G50380 807 / 0.0 exocyst subunit exo70 family protein F1 (.1) Lus10022459 [exp] 40 / 0.0002 AT5G50380 749 / 0.0 exocyst subunit exo70 family protein F1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G166400 [exp] 65 / 6e-13 AT1G72470 822 / 0.0 exocyst subunit exo70 family protein D1 (.1) Potri.003G068700 [exp] 59 / 7e-11 AT1G72470 810 / 0.0 exocyst subunit exo70 family protein D1 (.1) Potri.015G094800 [exp] 42 / 6e-05 AT5G50380 785 / 0.0 exocyst subunit exo70 family protein F1 (.1) Potri.012G097100 [exp] 39 / 0.0006 AT5G50380 754 / 0.0 exocyst subunit exo70 family protein F1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001113 pacid=23148497 polypeptide=Lus10001113 locus=Lus10001113.g ID=Lus10001113.BGIv1.0 annot-version=v1.0 ATGGCAGTTCAAGTATCGAGTCTTAATGATGTCAGTATGAATCAAACTAATAGTGGAAGAGTTCAAGACCAGCTTCAAGATAAAGTCAACTCCACCATCC AGATCGCCATGGCTCGTCTGGAAGACGAGTTCCGTAACATCTTACTTGGCCATACTTCCCCGATCGAGGAAGACGCACTCACTACCGACAACCCTGGCTC ATCCTCCTCCTCTTTCCACCACGCCACCGCTGGCGACGCAGATTCCGAATTCAGCGAAGACGACCGCGACCGCCTCTCCGGAGGCAGTGGAAGTGGCATC TCAGTCGGCGATGAGCCATCCGATCTCCAGCTCTCAGATCCAATCGCTCGAACCGGCTCGTCGTTTAGCAACAACAACTCTGATTTACAGGAAGGGAAGA GAGGGAGAGAAGAGTTTGAAGGGAGATGGGTTTTTATTTTTTATTTTGTTTGA
AA sequence Show only first row Show all	>Lus10001113 pacid=23148497 polypeptide=Lus10001113 locus=Lus10001113.g ID=Lus10001113.BGIv1.0 annot-version=v1.0 MAVQVSSLNDVSMNQTNSGRVQDQLQDKVNSTIQIAMARLEDEFRNILLGHTSPIEEDALTTDNPGSSSSSFHHATAGDADSEFSEDDRDRLSGGSGSGI SVGDEPSDLQLSDPIARTGSSFSNNNSDLQEGKRGREEFEGRWVFIFYFV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14090		ATEXO70D3	exocyst subunit exo70 family p...		Lus10001113 [exp]	0	1
AT2G48060			unknown protein		Lus10035352 [exp]	1.0	0.7847
AT5G58430		ATEXO70B1	exocyst subunit exo70 family p...		Lus10022795 [exp]	6.8	0.7638
AT2G45880	BZR	BAM7, BMY4	BETA-AMYLASE 4, beta-amylase 7...		Lus10017819 [exp]	8.3	0.7541
AT2G30800		ATVT-1, HVT1	helicase in vascular tissue an...		Lus10001049 [exp]	12.3	0.6955
AT1G19835			Plant protein of unknown funct...		Lus10032386 [exp]	16.9	0.7440
AT5G03330			Cysteine proteinases superfami...		Lus10023019 [exp]	21.8	0.7078
AT4G38900	bZIP	AtbZIP29	Basic-leucine zipper (bZIP) tr...		Lus10012390 [exp]	22.5	0.7437
AT2G42920			Pentatricopeptide repeat (PPR-...		Lus10012235 [exp]	28.4	0.7322
AT5G17680			disease resistance protein (TI...		Lus10043227 [exp]	29.5	0.7376
AT3G53170			Tetratricopeptide repeat (TPR)...		Lus10024144 [exp]	29.9	0.6719

Compare expression of checked genes

Lus10001113 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.