Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14290 670 / 0 alpha/beta-Hydrolases superfamily protein (.1) AT3G23540 654 / 0 alpha/beta-Hydrolases superfamily protein (.1.2) AT4G17150 434 / 2e-149 alpha/beta-Hydrolases superfamily protein (.1.2) AT3G47590 51 / 1e-06 alpha/beta-Hydrolases superfamily protein (.1) AT1G13610 50 / 2e-06 alpha/beta-Hydrolases superfamily protein (.1.2) AT3G62860 45 / 6e-05 alpha/beta-Hydrolases superfamily protein (.1) AT3G47560 45 / 7e-05 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G29840 44 / 0.0001 alpha/beta-Hydrolases superfamily protein (.1) AT2G47630 44 / 0.0002 alpha/beta-Hydrolases superfamily protein (.1) AT5G11910 42 / 0.0007 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034017 [exp] 928 / 0 AT4G14290 667 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10041237 [exp] 807 / 0 AT4G14290 684 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10021948 [exp] 806 / 0 AT4G14290 674 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10039125 [exp] 389 / 2e-129 AT4G17150 551 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10038733 [exp] 308 / 5e-99 AT4G17150 469 / 1e-162 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10011212 [exp] 56 / 2e-08 AT1G11090 430 / 2e-152 alpha/beta-Hydrolases superfamily protein (.1) Lus10012836 [exp] 47 / 3e-05 AT3G47590 359 / 1e-124 alpha/beta-Hydrolases superfamily protein (.1) Lus10013517 [exp] 46 / 3e-05 AT5G11910 351 / 2e-122 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10027619 [exp] 44 / 0.0003 AT5G20520 479 / 4e-172 WAVY GROWTH 2, alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G029200 [exp] 714 / 0 AT4G14290 680 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G200400 [exp] 658 / 0 AT4G14290 672 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.016G001000 [exp] 452 / 4e-155 AT4G17150 644 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.006G000700 [exp] 451 / 1e-154 AT4G17150 608 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.006G227900 [exp] 54 / 1e-07 AT5G11910 363 / 5e-127 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.014G129000 [exp] 49 / 4e-06 AT3G62860 499 / 5e-179 alpha/beta-Hydrolases superfamily protein (.1) Potri.003G096900 [exp] 47 / 2e-05 AT1G32190 387 / 7e-133 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.001G136400 [exp] 46 / 5e-05 AT1G32190 412 / 1e-142 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.018G068000 [exp] 45 / 0.0001 AT3G47590 360 / 4e-125 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10001114 pacid=23148500 polypeptide=Lus10001114 locus=Lus10001114.g ID=Lus10001114.BGIv1.0 annot-version=v1.0 ATGGAGCAGCTCGTCAACTTTATCATACGGCCACCCAGAGCTGAATACAACCCAAAGCATGATTTGTTGGAGCAAGAATTCATGTTACGAGGGAAATTGT ACCAGAGAAAGGATGTGGAGATAACAAATGACAGGGGGGATGTTCTTCAATGCAGCCATTATTTGCCCGTCGTCAGTCCTGGAGAAAAGCCTCTGCCCTG TGTAATTTATTGCCATGGAAACAGTGGGTGCAGGGCTGATGCAAGTGAAGCTGCTATCATACTACTGCCTTCAAATATAACAGTGTTCACTCTTGATTTT TCTGGATCTGGACTATCTGAAGGGGATCATGTCACCCTCGGATGGTATGAAAAAGATGACCTCAGGTCAGTGGTTGATTATTTGAGACAGGATGAAAATG TCTCTTTGATTGGGCTGTGGGGCCGTTCAATGGGCGCTGTCACAAGCCTAATGTATGGCGCACAGGATCCGTCAATTGCTGGAATGGTGCTGGACAGTCC CTTTTCCGATTTGGTTGATTTGATGATGGAACTTGTGGATACCTACAAGTTCCGTTTGCCTAAGTTTACAGTAAAATTTGCAATCCAGTACATGCGGAAA GCCATCCAGAAGAAGGCAAAGTTTGATATAACGGAGCTGAACACTATTAAGGTAGCTCAGTCTTGCTTTGTTCCGGCTTTATTTGGGCATGGAATTGAAG ATGATTTCATACAGCCTCATCATTCCGATCAGATATATGAAGCTTACATAGGAGATAAGAACATAATCAAATTTGAAGGAGATCATAACTCTCCCCGACC ACAATTTTATTTTGATTCCATAAACATCTTTTTCCACAATGTGTTACAACCTCCAGAGGATGAGATTGGAGGACCTTTATTGGACACAATGTTTGATTAC TTTGGTAAGGATCGGTTGAACACTGCTTATAACTTGAGCCATAGGCCGGAATCGTCAGTTGTACCCAACGTAGGTCAATCAGTAAACAGTACTGAAGACG CTATTGAGCAAGTCCGTGCCAGAAGGCCCATGAGTCGGATTGAGGATGGGGAAACTGATGATGAGCACAAGCCATCATCGTCTCAAATGATCAGCTTTGA GTTGGCCAACGGCGATCCGTATGGGCCTCATGTTCCGGCGACAACAGATGATGATCAGTTTGTCGAATATGAACTGGATGACTTGACAGGTGTCCCGTCT AATGCGGAAGAGGAAGAAAGGATGCTCATGGAAGCAATTATTGCTTCTTTGAAGGACATGGAAGTACCAGCAGCTAACGCCTCCGGTACAGAATCATCAC AAAGTAGTACACCAGCAGCTACTCCATCAAAGATGGAACATTTTGATTCTCCAGAGGAACCCACGGTTTCAAACAAAGTATCAACTCCAGCTTTAAAGAG CAATGGTGAAGTTTCACCTAGTTCTGGAGTTTCTTCTGCACTCCTCTCAGGGAATTCTTCTTCCATGGAGGAATCCAGGACGTCTTCCAGTCGTAGCGAC ACATCAGCAGGGGTTGAAACAGACCTGTCAGGTAAGACAAAGGCAACAGTAACAGTAGAACGGAACCCTTCAACTTCAACCCACATAATGGATGGTCTAA TGCGTCGTTGGGATTTCAACCTGTTCAGAAACAACAGATGA
AA sequence Show only first row Show all	>Lus10001114 pacid=23148500 polypeptide=Lus10001114 locus=Lus10001114.g ID=Lus10001114.BGIv1.0 annot-version=v1.0 MEQLVNFIIRPPRAEYNPKHDLLEQEFMLRGKLYQRKDVEITNDRGDVLQCSHYLPVVSPGEKPLPCVIYCHGNSGCRADASEAAIILLPSNITVFTLDF SGSGLSEGDHVTLGWYEKDDLRSVVDYLRQDENVSLIGLWGRSMGAVTSLMYGAQDPSIAGMVLDSPFSDLVDLMMELVDTYKFRLPKFTVKFAIQYMRK AIQKKAKFDITELNTIKVAQSCFVPALFGHGIEDDFIQPHHSDQIYEAYIGDKNIIKFEGDHNSPRPQFYFDSINIFFHNVLQPPEDEIGGPLLDTMFDY FGKDRLNTAYNLSHRPESSVVPNVGQSVNSTEDAIEQVRARRPMSRIEDGETDDEHKPSSSQMISFELANGDPYGPHVPATTDDDQFVEYELDDLTGVPS NAEEEERMLMEAIIASLKDMEVPAANASGTESSQSSTPAATPSKMEHFDSPEEPTVSNKVSTPALKSNGEVSPSSGVSSALLSGNSSSMEESRTSSSRSD TSAGVETDLSGKTKATVTVERNPSTSTHIMDGLMRRWDFNLFRNNR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14290			alpha/beta-Hydrolases superfam...		Lus10001114 [exp]	0	1
AT1G48790		AMSH1	associated molecule with the S...		Lus10009634 [exp]	5.0	0.9215
AT1G15740			Leucine-rich repeat family pro...		Lus10038107 [exp]	5.0	0.9362
AT1G79610		ATNHX6	Na+/H+ antiporter 6, ARABIDOPS...		Lus10039131 [exp]	5.5	0.9309
AT1G05620		NSH2, URH2	nucleoside hydrolase 2, uridin...		Lus10022062 [exp]	6.0	0.9336
AT5G10270		CDKC;1	cyclin-dependent kinase C;1 (....		Lus10026790 [exp]	9.8	0.9049
AT1G22930			T-complex protein 11 (.1.2)		Lus10015468 [exp]	9.8	0.9013
AT3G48470		EMB2423	embryo defective 2423 (.1)		Lus10001100 [exp]	10.1	0.9011
AT5G54730		ATATG18F	ARABIDOPSIS THALIANA HOMOLOG O...		Lus10036618 [exp]	14.1	0.9173
AT1G71010		FAB1C	FORMS APLOID AND BINUCLEATE CE...		Lus10016702 [exp]	15.0	0.8763
AT4G24740		AME1, AFC2	FUS3-complementing gene 2 (.1....		Lus10006230 [exp]	16.4	0.9175

Compare expression of checked genes

Lus10001114 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.