Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21580 428 / 3e-149 ABCI12 ATP-binding cassette I12, cobalt ion transmembrane transporters (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G199900 [exp] 521 / 0 AT3G21580 513 / 0.0 ATP-binding cassette I12, cobalt ion transmembrane transporters (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02361 [flax] [poplar] CbiQ Cobalt transport protein
Representative CDS sequence Show only first row Show all	>Lus10001117 pacid=23148490 polypeptide=Lus10001117 locus=Lus10001117.g ID=Lus10001117.BGIv1.0 annot-version=v1.0 ATGAGCGTCTCTTGCTGTAAAATCTCGGCGGCTTCTTCTTCTTTCCTCTCCGTCCGCCATAGCCCTAACTTGAGAATCCTAATCCCTGTGTCTTCCTCTA AATTTCACACGAGAAGTAGTTCCACCCGTCGAGCTTCCGTTTCGCTCGACTTGACTAGTAGAAATCTGCGGTTTAGGAACGAGCCTGTTTGTGTTCGAGC TTCAGCGGACGATACTGGCCAGAGTAGGACTGAGAAATGGATAAGCAGGCTAGTACCGGACGGCGCTTTCACTATCGCCGATAAGATATTGAGACTGATC TCGGGGGCAACTGCCAGTCCCATCGCACAGTACATTTCTTCACCCGCCACGTTTCTGCATTCCGTCGACCCTAGAATCAAATTGACATGGCTGTTGGCAC TTGTGGTTTTACCGGCAAGGTCACACATTATTATGCGGGTTGGATTGGTTGCTTACTTGGCTGCTCTATCCATTTGCGTTCTCCCCCGCAATGTCTGGAC GGATCAATTAGGAAGGGTGTCACTGCTCTCAGGAATTCTGTTCTTGATGTTAGGCTTTGGTTCAGATTCAGTGCCTTCACTAGTGCAGTTGAGAACCCCA CCGCCTTCTATCACAGGATTGCCTAACCTTCCTCAGTCTCTGCGTGGTTATTCTTACTTGATTTTCAAGCTAGGGCCTCTACAGTTTACAAGGAAAGGCT TGTCAGTTGCAAGCACAGCCGCCTGCTTAACCTTCACTATATTTCAAAGTGCAAGCCTTTGTCTTGCAACTACAACTCCAGAACAGCTAGCGTCTGCTTT GAGGTGGTTTATGCTTCCTTTAAGACATGTCGGCGTTCCGGTTGCTGAAATGACTTTAACTCTCATGCTTTCCTTGCGGTTCATCAATCTTGTGTTTGAC GAGGTGAGGAATGTTGCGCTAGGGATTGTGTCTCGTAGGATAAACTGGAAGCTACTGACTGTCATGGAAACAATAGACATTCTTGCTTCCTACATTCGTC GGATCTTCAAGAACATTTTCAGTCATGCAGACCAGATATCCCAGGCGATGATTGTACGAGGTTTTCGAGGGGACAGCAATGCTCATAAGATCTACTACTT ATCAGACTCGTCGTTGGGGATTGCTGACTTCATTGCATCACTACTGCTTGTCGGTGTTGCCTGTTGTGCTGTTTTGTCTGATCATATTCTGGTGTGA
AA sequence Show only first row Show all	>Lus10001117 pacid=23148490 polypeptide=Lus10001117 locus=Lus10001117.g ID=Lus10001117.BGIv1.0 annot-version=v1.0 MSVSCCKISAASSSFLSVRHSPNLRILIPVSSSKFHTRSSSTRRASVSLDLTSRNLRFRNEPVCVRASADDTGQSRTEKWISRLVPDGAFTIADKILRLI SGATASPIAQYISSPATFLHSVDPRIKLTWLLALVVLPARSHIIMRVGLVAYLAALSICVLPRNVWTDQLGRVSLLSGILFLMLGFGSDSVPSLVQLRTP PPSITGLPNLPQSLRGYSYLIFKLGPLQFTRKGLSVASTAACLTFTIFQSASLCLATTTPEQLASALRWFMLPLRHVGVPVAEMTLTLMLSLRFINLVFD EVRNVALGIVSRRINWKLLTVMETIDILASYIRRIFKNIFSHADQISQAMIVRGFRGDSNAHKIYYLSDSSLGIADFIASLLLVGVACCAVLSDHILV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G21580		ABCI12	ATP-binding cassette I12, coba...		Lus10001117 [exp]	0	1
AT1G69710			Regulator of chromosome conden...		Lus10036737 [exp]	6.2	0.7687
AT1G26120		ICME-LIKE1	Isoprenylcysteine methylestera...		Lus10035064 [exp]	6.3	0.8319
AT5G27740		RFC3, EMB251, E...	replication factor C 3, EMBRYO...		Lus10019391 [exp]	6.6	0.8105
AT5G63810		BGAL10	beta-galactosidase 10 (.1)		Lus10022645 [exp]	9.9	0.8214
AT4G04940			transducin family protein / WD...		Lus10036625 [exp]	13.0	0.8013
AT1G21460		SWEET1, AtSWEET...	Nodulin MtN3 family protein (....		Lus10028634 [exp]	13.1	0.8362
AT4G20160			unknown protein		Lus10036249 [exp]	19.0	0.8057
AT4G14750		IQD19	IQ-domain 19 (.1)		Lus10039367 [exp]	20.0	0.7668
AT2G45970		CYP86A8, LCR	LACERATA, "cytochrome P450, fa...		Lus10017789 [exp]	21.0	0.8071
AT4G14750		IQD19	IQ-domain 19 (.1)		Lus10039366 [exp]	22.0	0.7635

Compare expression of checked genes

Lus10001117 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.