Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06620 413 / 4e-144 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G30840 369 / 8e-127 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G06650 367 / 3e-126 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT2G30830 366 / 6e-126 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G59530 364 / 6e-125 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G61400 364 / 6e-125 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G04350 362 / 2e-124 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G06640 359 / 5e-123 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) AT5G59540 357 / 4e-122 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT2G25450 354 / 3e-121 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000426 [exp] 760 / 0 AT1G06620 412 / 5e-144 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10002888 [exp] 543 / 0 AT1G06620 384 / 7e-133 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10001109 [exp] 530 / 0 AT1G06620 379 / 4e-131 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10002894 [exp] 508 / 2e-180 AT1G06620 369 / 2e-125 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10002892 [exp] 488 / 7e-174 AT1G06620 381 / 1e-131 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10001108 [exp] 477 / 2e-169 AT1G06620 362 / 2e-124 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10019435 [exp] 453 / 3e-160 AT1G06620 357 / 3e-122 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10021943 [exp] 452 / 2e-159 AT1G06620 443 / 5e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10017701 [exp] 444 / 4e-157 AT1G06620 346 / 2e-118 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G073166 [exp] 423 / 4e-148 AT1G06620 470 / 7e-167 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G073300 [exp] 409 / 1e-142 AT1G06620 455 / 7e-161 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.008G165400 [exp] 396 / 2e-137 AT1G06620 444 / 1e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G073232 [exp] 387 / 4e-134 AT1G06620 402 / 7e-140 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.011G156200 [exp] 368 / 2e-126 AT1G06650 430 / 7e-151 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.010G073100 [exp] 365 / 3e-125 AT1G06650 414 / 2e-144 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.013G045000 [exp] 340 / 1e-115 AT1G06620 369 / 6e-127 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.017G135800 [exp] 312 / 3e-104 AT1G06620 323 / 1e-108 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.002G040700 [exp] 311 / 7e-104 AT1G06620 330 / 2e-111 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.005G222300 [exp] 307 / 1e-102 AT1G06620 340 / 3e-115 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10001118 pacid=23148498 polypeptide=Lus10001118 locus=Lus10001118.g ID=Lus10001118.BGIv1.0 annot-version=v1.0 ATGGCGCCCGCTGCTGATAGTAATTATGATCGACTTGCAGAGCTGAAAGCCTTTGACGAATCAAAAGCAGGAGTGAAAGGTGTGGTGGATTCTGGAATCA AAGAGGTCCCTCGAATGTTCCATGCCCCAGCACATTTGCTGGACGAAGGACCCAAGTATTCAGCTGAAGATCCAAACTTCATTGTCCCAGTGATTGACCT GGAAGGAGGATTATGCAAAGATGATCCTGAGAAGAGGAAGCAAATTGTTGAGAAAATCAGGGATGCATCTAAAACTTGGGGATTCTTCCAAATTCTCAAC CACGGAGTCCCTGTCGAAATCACGGAAGACATGATTGCTGGAGTCCACAGGTTCTTCGACCTTGACGTTGACCAGAAGAAGGAGTTCTACGGGAGTGACA TGAGCAAGAAGGTTGTCTACGCCAGCAACTTCAATCTGTACAATTCACCAGCTGCTAACTGGAGGGATTCCATACTCTACTTCATGGAACCAAACCCACC AAAGCCAGAGGAATTGCCAGCTTGCTCCAGAGAAATCGTTCCCAAGTATTCTGAGGAAATGATGAAGTTGGGGGAATTGCTTTTCCAGTTGTTGTCTGAG GCTTTGGGTCTCTCATCAAACCATTTGAAGGATATGGATTGTTTGAAAGTGCTGGGGTTGACCTGCAATTACCATCCACCTTGTCCTCAACCAAAACTCA CTCTTGGAACTACAGAACATACTGATATTTCTTTCCTCACTGTCATTTTACAAGATCACTTTGGGGGTCTTCAGATTCTTCACGACAAACATTGGGTAGA TGTCCCTTTTGTCCCTGGTGGAATGGTGGTCAACATGGGAGATATGCTTCAGTTAATCTCCAATGATAAGCTTTCAAGTGTAGTTCATAGGGTTCGTGTC AAAAATGCTGGTCCAAGAGTCTCTGTTGCTGCATTCTTCGGCCATGGTGCATCCTTCTCTTCCAGGGTCTATGGACCTATCAAAGAGTTGCTCTCTGAAG ATAACCCTCCCATATATCAGGAAACGACAAGTTACGACTTCTTCATGCGATCTGTCAAGCAAGGTTTTGACGGCAAATCTGTTCTGCCCCAGCTCAAGCT CTGA
AA sequence Show only first row Show all	>Lus10001118 pacid=23148498 polypeptide=Lus10001118 locus=Lus10001118.g ID=Lus10001118.BGIv1.0 annot-version=v1.0 MAPAADSNYDRLAELKAFDESKAGVKGVVDSGIKEVPRMFHAPAHLLDEGPKYSAEDPNFIVPVIDLEGGLCKDDPEKRKQIVEKIRDASKTWGFFQILN HGVPVEITEDMIAGVHRFFDLDVDQKKEFYGSDMSKKVVYASNFNLYNSPAANWRDSILYFMEPNPPKPEELPACSREIVPKYSEEMMKLGELLFQLLSE ALGLSSNHLKDMDCLKVLGLTCNYHPPCPQPKLTLGTTEHTDISFLTVILQDHFGGLQILHDKHWVDVPFVPGGMVVNMGDMLQLISNDKLSSVVHRVRV KNAGPRVSVAAFFGHGASFSSRVYGPIKELLSEDNPPIYQETTSYDFFMRSVKQGFDGKSVLPQLKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10001118 [exp]	0	1
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10000426 [exp]	1.0	1.0000
AT3G26210		CYP71B23	"cytochrome P450, family 71, s...		Lus10012767 [exp]	3.5	0.9257
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10001109 [exp]	4.2	0.9053
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Lus10004443 [exp]	5.0	0.8993
AT1G25270			nodulin MtN21 /EamA-like trans...		Lus10020987 [exp]	7.5	0.8797
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Lus10040932 [exp]	10.6	0.8896
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10004441 [exp]	13.1	0.8866
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10002892 [exp]	16.9	0.8733
AT4G14750		IQD19	IQ-domain 19 (.1)		Lus10009187 [exp]	19.7	0.8818
AT1G65820			microsomal glutathione s-trans...		Lus10020793 [exp]	22.1	0.8840

Compare expression of checked genes

Lus10001118 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.