Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39940 506 / 4e-177 FAD/NAD(P)-binding oxidoreductase family protein (.1), FAD/NAD(P)-binding oxidoreductase family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015345 [exp] 732 / 0 AT5G39940 521 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1), FAD/NAD(P)-binding oxidoreductase family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G130000 [exp] 557 / 0 AT5G39940 557 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1), FAD/NAD(P)-binding oxidoreductase family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03486 [flax] [poplar] HI0933_like HI0933-like protein
Representative CDS sequence Show only first row Show all	>Lus10001121 pacid=23161789 polypeptide=Lus10001121 locus=Lus10001121.g ID=Lus10001121.BGIv1.0 annot-version=v1.0 ATGAGCTTGAAATCCAGTTTAGCTACCTTCTTTCTCCAATTTGGAATTCTTCCTCCTTGTGCTTCTTACTCTACTACCTCCTCCAAGGCTGCTCTTCGTT GCAATTTTAGTCATCTCCGCTCCATACCTCCCAGTAAACGCCACTTTACAGCAGCTGCTACACCACCAGTACCTTCACCACTACTCGAAAAGTCCAATGG AGAATTGTTAGTGGTAGTTGGCGGCGGAGCAGCTGGAGTGTATGGAGCCATAAGAGCCAAGTCTATAGCGCCTCATCTGAATGTTGTAGTTCTGGAGAAA GGAAAATTTCTATCCAAGGTGAAAATATCTGGAGGTGGAAGATGCAACGTCACAAACGGGCATTGTCCAGACAATACAGTTAGGAAAACTATGTCCAGAC AATATTGTGTAATTTTGGCAGAACATTACCCTAGAGGTCATAGAGAACTAAGAGGGTCTTTCTTCTTCACTCATGGGCCGCAAGACACAATGTCATGGTT TTCCGATCATGGGGTGCCATTGAAGATTGAGGAAGATGGACGAGTGTTTCCTGTGACCAACAATTCATCCTCAATAGTTGATTGTCTTCTGTCTGAGGCA AGAGAAAGAGGAGGAAAAACTGTAACTAGTGCTTCTGCTGGAGCCCAAGGAAAGTTTGTTGTGAAGGTTGAAAAGAGGACGGTTGATTTTCTTGAATATT TGGAAGCTGACTATTTAATGATTGCAAGTGGGAGTAGCCGTCAGGGTTATGATATCGCAGTTCAACTTGGTCATTCGATTATAGATGGTGTCCCAAGCTT ATTCACTTTCAAGATTAACGATCCACTACTGTCAGAGTTGTCAGGGCTAGGTCCAATGCTAGTTACACACTGGGGACTCAGTGGCCCTGTAATACTTCGA CTATCAGCATGGGGGGCTCGGGATCTGTTCAAAGCAGGCTACAAAGCTTTTCTTATGGTCGACTTTGTACCGGATATGCACATTGAAGATATGAAGTCAA TTCTTAGTCAACAAAAGCAAAAGCTCGTGAGGAACATGGACAGACGAAAAGATTTGAGAACATCGGAATTTGGGATTGTGAAGAGGTTTTGGAAGTATAT ACTGGATCGTGAGGGTTTAAATTGTGATACCTTGTGGGCTTCCGTATCAAATAACTCCTTAAAGTCTGTTGCTTATCTGTTGAAGAATTGCACATTTGAA GTCGTAGGGAAGGGTCAGTTCAAGGACGAATTTGTCACTTGTGGAGGAGTTCCCTTGTCAGAGGCATCTCACCTCATCCTTGCTCAATACTACCCCTCTC TGTCTGCTACTCGATATGCCTTAACTTGTTGCTTGTATTTTTCTTTTTGTTTGAAGATATCTCTGAAAACAATGGAAAGCAAGATACTCCCAAACCTCTT CTTTGCCGGAGAGGTACTTAACGTGGACGGGGTGACTGGTGGTTTTAATTTTCAGAATGCATGGTCGGGTGGTTACATTGCCGGAACAACGATAGGGGAA GTGGCAGCTAAAGCTGACTGA
AA sequence Show only first row Show all	>Lus10001121 pacid=23161789 polypeptide=Lus10001121 locus=Lus10001121.g ID=Lus10001121.BGIv1.0 annot-version=v1.0 MSLKSSLATFFLQFGILPPCASYSTTSSKAALRCNFSHLRSIPPSKRHFTAAATPPVPSPLLEKSNGELLVVVGGGAAGVYGAIRAKSIAPHLNVVVLEK GKFLSKVKISGGGRCNVTNGHCPDNTVRKTMSRQYCVILAEHYPRGHRELRGSFFFTHGPQDTMSWFSDHGVPLKIEEDGRVFPVTNNSSSIVDCLLSEA RERGGKTVTSASAGAQGKFVVKVEKRTVDFLEYLEADYLMIASGSSRQGYDIAVQLGHSIIDGVPSLFTFKINDPLLSELSGLGPMLVTHWGLSGPVILR LSAWGARDLFKAGYKAFLMVDFVPDMHIEDMKSILSQQKQKLVRNMDRRKDLRTSEFGIVKRFWKYILDREGLNCDTLWASVSNNSLKSVAYLLKNCTFE VVGKGQFKDEFVTCGGVPLSEASHLILAQYYPSLSATRYALTCCLYFSFCLKISLKTMESKILPNLFFAGEVLNVDGVTGGFNFQNAWSGGYIAGTTIGE VAAKAD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G39940			FAD/NAD(P)-binding oxidoreduct...		Lus10001121 [exp]	0	1
AT2G39190		ATATH8	Protein kinase superfamily pro...		Lus10036522 [exp]	1.0	0.9161
AT2G31170		FIONA, SYCOARAT...	cysteinyl t-RNA synthetase, FI...		Lus10001953 [exp]	1.4	0.9024
AT1G02145		EBS4, ALG12	EMS-MUTAGENIZED BRI1\(BRASSINO...		Lus10019399 [exp]	1.7	0.8879
AT4G35520		MLH3, ATMLH3	MUTL protein homolog 3 (.1)		Lus10035985 [exp]	3.7	0.8225
AT3G48820			Glycosyltransferase family 29 ...		Lus10043193 [exp]	4.1	0.8216
AT3G20650			mRNA capping enzyme family pro...		Lus10027333 [exp]	5.3	0.8424
AT1G16930			F-box/RNI-like/FBD-like domain...		Lus10026190 [exp]	5.7	0.8284
AT4G00490		BAM2, BMY9	BETA-AMYLASE 9, beta-amylase 2...		Lus10030392 [exp]	6.2	0.8210
AT1G12244			Polynucleotidyl transferase, r...		Lus10035777 [exp]	6.3	0.8532
AT5G61460		SMC6B, ATRAD18,...	STRUCTURAL MAINTENANCE OF CHRO...		Lus10027219 [exp]	6.6	0.8651

Compare expression of checked genes

Lus10001121 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.