Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G28630 307 / 3e-103 Protein of unknown function (DUF569) (.1), Protein of unknown function (DUF569) (.2) AT3G01311 293 / 4e-98 Protein of unknown function (DUF569) (.1) AT1G59710 285 / 8e-95 Protein of unknown function (DUF569) (.1) AT1G27100 275 / 4e-88 Actin cross-linking protein (.1) AT1G69890 258 / 1e-84 Protein of unknown function (DUF569) (.1) AT1G69900 167 / 4e-48 Actin cross-linking protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015346 [exp] 522 / 0 AT3G28630 317 / 3e-107 Protein of unknown function (DUF569) (.1), Protein of unknown function (DUF569) (.2) Lus10030804 [exp] 300 / 9e-101 AT1G59710 357 / 2e-124 Protein of unknown function (DUF569) (.1) Lus10036694 [exp] 280 / 4e-93 AT1G59710 343 / 5e-119 Protein of unknown function (DUF569) (.1) Lus10013281 [exp] 203 / 7e-64 AT1G59710 240 / 2e-79 Protein of unknown function (DUF569) (.1) Lus10036693 [exp] 172 / 3e-52 AT1G27100 180 / 2e-54 Actin cross-linking protein (.1) Lus10037230 [exp] 171 / 1e-49 AT1G27100 181 / 3e-54 Actin cross-linking protein (.1) Lus10037231 [exp] 121 / 1e-31 AT1G27100 192 / 2e-57 Actin cross-linking protein (.1) Lus10036692 [exp] 47 / 6e-07 AT1G27100 49 / 2e-08 Actin cross-linking protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G075900 [exp] 320 / 2e-106 AT1G27100 431 / 1e-147 Actin cross-linking protein (.1) Potri.004G130200 [exp] 317 / 4e-105 AT1G27100 421 / 2e-143 Actin cross-linking protein (.1) Potri.010G035100 [exp] 318 / 9e-105 AT1G27100 541 / 0.0 Actin cross-linking protein (.1) Potri.008G193900 [exp] 306 / 4e-100 AT1G27100 494 / 2e-171 Actin cross-linking protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0066 [flax] [poplar] Trefoil PF04601 [flax] [poplar] DUF569 Domain of unknown function (DUF569)
Representative CDS sequence Show only first row Show all	>Lus10001124 pacid=23161788 polypeptide=Lus10001124 locus=Lus10001124.g ID=Lus10001124.BGIv1.0 annot-version=v1.0 ATGAATGCAAACAGAAAGGAATACATAACGGTGAAAGTAAACCTTGATCCAATCGTTGCTCCATTAGTCCGATCCAAACGGCTGGTGAATTTTCCTGTGT TCTCTCATTTTCCTGCACACAACCATCCAGTTTTTGTTTCCGGCGGGGCAAGAACGCAAAGCAATTCTCATCCAATATTACGTATGGAACTATTCGAGAA AGCGAGGGTGATCCGGCTGCGAAGCCACCACGACAAATACCTGCTAGCTGACGACGACCAGGAAGGCGTGAGCCAAGATCGGAACGGAATATCAAGGAAT GCGAGATGGACGGTGGAGATTGTGGAAGGGTACCAGGCTATACGGTTGCAGAGCTGCTACAGCAAGTATCTTACAGCCTCCTCCACGCCTTTCTTGCTAG GAATGACTGGGAAGAAGGTGATCCAGACGTCTCCTTCAAGGCTGGATTCCTCCCTTGATTGGGAACCCATCAGAGAAGGCGTTCAGGTTCGTCTCAAGAC CCGCCACGGCCAATACCTTCGAGCTAATGGTGGCGTACCTCCTTGGAGGAATCATGTCACTCATGACATTCCTCACAGAACAGCCACCCAGGATTGGATA CTGTGGGATGTTGATATTTTAGATTACATCAAACCACCACAACATTCTCCGGGCAAACACGGTGGCCGATCTTTTAAGGCCTCCCTCCACCCTCCTCCTC CGCTTTCTTCTTCTTCTACTACTACGGAACCTAACCTGACAAGAAGAAGAGAGCCAGAGTGTGATGATTCGTTTGTGATGCCGGCGAAAAATGAAGGGAG GGTTATAAAGTACGTAGTAGCAAATAAGAAAGGTGAAGTTGAGGAAGATGATCAAGGAAGTAGCTTTACATTCAAGGGAAGCGTTGTGGATGAGTTGAAG GAAAGGTTGGAGGAAGAGACAGGGATGAATGACATACTTGTATGTTCTCAAAATCCTTTCAATGGAATGCTCAATCCTCTCACCTTGCATCTTCCTCCGA ACAAAGCCAATATGCACGTCGTTGTAGTTCCCTTTGCTGGAAAAGATGCGAAGAACATTTTGCGCCCCGCAAGTCCGCCTTCAGATTGA
AA sequence Show only first row Show all	>Lus10001124 pacid=23161788 polypeptide=Lus10001124 locus=Lus10001124.g ID=Lus10001124.BGIv1.0 annot-version=v1.0 MNANRKEYITVKVNLDPIVAPLVRSKRLVNFPVFSHFPAHNHPVFVSGGARTQSNSHPILRMELFEKARVIRLRSHHDKYLLADDDQEGVSQDRNGISRN ARWTVEIVEGYQAIRLQSCYSKYLTASSTPFLLGMTGKKVIQTSPSRLDSSLDWEPIREGVQVRLKTRHGQYLRANGGVPPWRNHVTHDIPHRTATQDWI LWDVDILDYIKPPQHSPGKHGGRSFKASLHPPPPLSSSSTTTEPNLTRRREPECDDSFVMPAKNEGRVIKYVVANKKGEVEEDDQGSSFTFKGSVVDELK ERLEEETGMNDILVCSQNPFNGMLNPLTLHLPPNKANMHVVVVPFAGKDAKNILRPASPPSD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G28630			Protein of unknown function (D...		Lus10001124 [exp]	0	1
AT2G32460	MYB	ATMYB101, AtM1	ARABIDOPSIS THALIANA MYB 1, my...		Lus10040063 [exp]	3.2	0.8201
AT5G38260			Protein kinase superfamily pro...		Lus10025492 [exp]	4.9	0.7698
AT5G24090		ATCHIA	chitinase A (.1)		Lus10040419 [exp]	5.5	0.7999
AT5G65550			UDP-Glycosyltransferase superf...		Lus10028864 [exp]	11.7	0.8004
AT5G57580			Calmodulin-binding protein (.1...		Lus10018437 [exp]	15.0	0.7780
AT4G11070	WRKY	ATWRKY41, WRKY4...	WRKY family transcription fact...		Lus10003894 [exp]	15.0	0.7626
AT5G24090		ATCHIA	chitinase A (.1)		Lus10023534 [exp]	16.9	0.7463
AT3G51770		ATEOL1, ETO1	ARABIDOPSIS ETHYLENE OVERPRODU...		Lus10026455 [exp]	17.1	0.7185
AT2G37550		ASP1, AGD7	yeast pde1 suppressor 1, ARF-G...		Lus10036211 [exp]	19.2	0.6953
AT4G13450			Adenine nucleotide alpha hydro...		Lus10014459 [exp]	20.3	0.7661

Compare expression of checked genes

Lus10001124 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.