Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18905 380 / 5e-124 Transducin/WD40 repeat-like superfamily protein (.1.2) AT2G16760 351 / 3e-115 Calcium-dependent phosphotriesterase superfamily protein (.1) AT2G47370 323 / 2e-104 Calcium-dependent phosphotriesterase superfamily protein (.1) AT4G18900 315 / 1e-99 Transducin/WD40 repeat-like superfamily protein (.1) AT4G35370 311 / 2e-98 Transducin/WD40 repeat-like superfamily protein (.1) AT5G28660 137 / 3e-37 NHL domain-containing protein (.1) AT2G01410 103 / 3e-23 NHL domain-containing protein (.1) AT1G53090 52 / 1e-06 SPA4 SPA1-related 4 (.1.2) AT5G58230 49 / 1e-05 MSI1, MEE70, ATMSI1 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) AT2G19540 46 / 9e-05 Transducin family protein / WD-40 repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015348 [exp] 601 / 0 AT4G18905 527 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10015347 [exp] 575 / 0 AT2G16760 374 / 6e-130 Calcium-dependent phosphotriesterase superfamily protein (.1) Lus10004613 [exp] 447 / 3e-151 AT4G35370 384 / 1e-130 Transducin/WD40 repeat-like superfamily protein (.1) Lus10004536 [exp] 230 / 9e-71 AT4G18905 194 / 2e-60 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10031811 [exp] 92 / 1e-19 AT2G01410 452 / 3e-159 NHL domain-containing protein (.1) Lus10031240 [exp] 91 / 3e-19 AT2G01410 458 / 1e-161 NHL domain-containing protein (.1) Lus10036319 [exp] 47 / 4e-05 AT1G80710 415 / 5e-139 DROUGHT SENSITIVE 1 (.1) Lus10020917 [exp] 47 / 6e-05 AT5G58230 696 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10033460 [exp] 47 / 6e-05 AT5G58230 781 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G019833 [exp] 461 / 2e-155 AT4G18905 563 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.007G019601 [exp] 457 / 5e-154 AT4G18905 566 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.014G120300 [exp] 393 / 2e-131 AT2G16760 393 / 1e-137 Calcium-dependent phosphotriesterase superfamily protein (.1) Potri.006G111600 [exp] 102 / 3e-23 AT2G01410 375 / 5e-129 NHL domain-containing protein (.1) Potri.001G156300 [exp] 97 / 2e-21 AT2G01410 431 / 3e-151 NHL domain-containing protein (.1) Potri.002G216200 [exp] 48 / 2e-05 AT5G58230 784 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.014G179700 [exp] 47 / 3e-05 AT5G58230 790 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G094000 [exp] 45 / 0.0002 AT2G19540 623 / 0.0 Transducin family protein / WD-40 repeat family protein (.1) Potri.004G057600 [exp] 44 / 0.0004 AT1G29260 556 / 0.0 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1) Potri.006G151800 [exp] 44 / 0.0004 AT2G19520 814 / 0.0 MULTICOPY SUPPRESSOR OF IRA1 4, Transducin family protein / WD-40 repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10001126 pacid=23161787 polypeptide=Lus10001126 locus=Lus10001126.g ID=Lus10001126.BGIv1.0 annot-version=v1.0 ATGATACCGGCACTTTCATGGTTGCCGAAAGGGGCGGCGAAGTCCGTCCCTGAAGTGGCAGAACTACCTTCCAAAGAAGAGATCGAAGAGCTGTTGAAGT CTGGTGATTTAGAAGAAGAAGAAGAAGAAAGTGGAGGAAGTGGGAATGAATCGGAGGATGATGGAAATATGGATGTGGAGGCCGAGATGCAATCTGACGG AGTCGGTCAAGCACTAGCTGTAGCAGACGCACTTGGCAGAAAATCGAAAACCAACAACCTAGATGCTGCCTTGGAGGAGCTTCACTTGGAAGATTATGAT GACGAGGATGAAGACGTCAAGATTTTCAGCTCTGGACTTGGAGGCGTTTATTATCCTGATAACAAAATGGACCCTAATCTCAAGGATAAAGATGATGATG ACTCAGAAGAGGAAGAGGATATGACTATTAAATCAACAGATGCAGTAATAGTTTGTGCGCGTACCGAAGAAGAACTCAGTCATCTCGAGGTGTGGATATC TGAAGATTCTGATAATGGTGAGCCAAATATGTACATTCACCATGATATTATCCTTTCAGCGTTTCCTCTGTGTGTAGCATGGCTTGATTGCCCAATTAAA GGAGGGGAAAAAGGGAATTTTATTGCTGTTGGTTCAATGGAATCTGCTATTGAACTATGGGATCTTGACATAATTGAGGAAGTACAACCATCTGCAGTGT TAGGTGGTGTTGTTGATGCTAAGGAAAATAAGAAGAAGAAAAAGAAAAAGAAAGGAAAGGGCTCAATAAAGTACAAAGAAGGAAGTCACACTGATTCCGT GCTTGGACTCGCTTGGAACAAGCAGTTTAGGAATGTCCTTGCCAGTGCCAGTGCAACTAAAGATGGTAGGAACCCGTCACACCCAGGAATCAGATGGTCG GTTACAGCTGATGTTGAAAGCTTGGCATGGGATCCACACAGTAGACACAACTTTGTGGTGAGTCTTGCAGATGGTACGGTCCAAGGTTTTGATATCCGTA CAGCAACATCTGCTGCAAGTTGTGATTTGAAGCCAACTTACACAATCCATGCACATGACAAAGAAGTGTGCACAATTGCCTATAATCCTTGTGTTCCTAA TTTTCTTGCAACTGGATCAACGGATAAAATGGTAAAAGTTTGGGATTTATCTAACAACCAACCTTCATGTGTTGCATCTAACAATCCGAAAGCGGGAGCT GTATTCTCGATTTGCTTCTCAGTGGATAGCCCATTTCTGATGGCAATCGGAGGTTCGAAGGGAAATTTAGAATATCTGCTCCCTGAAATCAATCCTCATC CTCCTCTTATTTTCCGCCGTCCCAATCCCGCCCTCCCAATCGAATACCTACTCTCCCTCGAACTCTCACCCCCTCCCCCCCACGTCTTCCACTACCACAG CACCGGCGGGTTTCTCCGGGAGTGCGCCAAGTGGGATCCCTCTGCCAACCGATTCCTCGTCTCTAACTTCGAAGGAGGTCTCGGCGAGATTCGCGTTCCG GCCGACTACTCCCCTGGCGATGTATTGGAAGAAGTCACCCTCGCCAAGGACGCCGACGTCGCAGGAAACGCATCATTGGGGTTGGTGGTTGACCTTCCCA GGAATCGGGTGCTGGTGGCCGTTGCCGATGTTTTGGGGAACAGCTACAGCGCCTTGGCAGCCTATGACATCTCCACCTGGAAGCGTTTGTTTCTCACTCA ACTCAGCGGCCCCGAGGACGGCAAAACCTTTGCTGACGACGTGGCAGTGGACCCAGAGGGAAATGCTTACGTGACAGACGTGGCAGGCAACAAAATATGG AAAGTAGGGAAACAAGGCCACCTCATATCCGCCATCACTCACCCGCTCTTCACTCCAAAGCAATGGTACAAAACCCTGGTTGGACTTAACGGGATCGTCT ACCACCCTCAAGGCTTCTTGATCGTCATCCACACTTTCACCGGCAACTTGTTTAAGATCAGGGTTTCTGGCCCCGGCCAAGAAGATGATGATCATCATCA TCATCAGGTGACCAGCATTGCGGTTCAAGGCTCGCTCGCATTTGGAGACGGTATAGAGCTGCTGTCCCCTACTAAGCTGGTGGTGGCTGGTTCCACTCGG TCTGCGAGGTTGGTGGAGAGCTCCGACGGATGGGAGACTGCCACTGTGGTTGGTATCTTCAAAGGGCCTTTGCATCGAATGGCCACTGCGGCTACTGTGA AAGATGGCCATGTGTATCTAAGTCACATGTTTGGTATTGGTTACCCTAGCAAGAAGCATGCTCTTGTTCAAGCTGTTTTCTCTGCTCCTTGA
AA sequence Show only first row Show all	>Lus10001126 pacid=23161787 polypeptide=Lus10001126 locus=Lus10001126.g ID=Lus10001126.BGIv1.0 annot-version=v1.0 MIPALSWLPKGAAKSVPEVAELPSKEEIEELLKSGDLEEEEEESGGSGNESEDDGNMDVEAEMQSDGVGQALAVADALGRKSKTNNLDAALEELHLEDYD DEDEDVKIFSSGLGGVYYPDNKMDPNLKDKDDDDSEEEEDMTIKSTDAVIVCARTEEELSHLEVWISEDSDNGEPNMYIHHDIILSAFPLCVAWLDCPIK GGEKGNFIAVGSMESAIELWDLDIIEEVQPSAVLGGVVDAKENKKKKKKKKGKGSIKYKEGSHTDSVLGLAWNKQFRNVLASASATKDGRNPSHPGIRWS VTADVESLAWDPHSRHNFVVSLADGTVQGFDIRTATSAASCDLKPTYTIHAHDKEVCTIAYNPCVPNFLATGSTDKMVKVWDLSNNQPSCVASNNPKAGA VFSICFSVDSPFLMAIGGSKGNLEYLLPEINPHPPLIFRRPNPALPIEYLLSLELSPPPPHVFHYHSTGGFLRECAKWDPSANRFLVSNFEGGLGEIRVP ADYSPGDVLEEVTLAKDADVAGNASLGLVVDLPRNRVLVAVADVLGNSYSALAAYDISTWKRLFLTQLSGPEDGKTFADDVAVDPEGNAYVTDVAGNKIW KVGKQGHLISAITHPLFTPKQWYKTLVGLNGIVYHPQGFLIVIHTFTGNLFKIRVSGPGQEDDDHHHHQVTSIAVQGSLAFGDGIELLSPTKLVVAGSTR SARLVESSDGWETATVVGIFKGPLHRMATAATVKDGHVYLSHMFGIGYPSKKHALVQAVFSAP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18905			Transducin/WD40 repeat-like su...		Lus10001126 [exp]	0	1
AT3G58660			Ribosomal protein L1p/L10e fam...		Lus10024134 [exp]	1.4	0.8418
AT5G66540			unknown protein		Lus10042107 [exp]	5.7	0.7392
AT1G80860		ATPLMT	ARABIDOPSIS PHOSPHOLIPID N-MET...		Lus10026087 [exp]	11.4	0.7374
AT3G25545			unknown protein		Lus10029095 [exp]	11.4	0.7324
AT1G31817		NFD3	NUCLEAR FUSION DEFECTIVE 3, Ri...		Lus10012155 [exp]	11.7	0.7463
AT2G20490		NOP10, EDA27	EMBRYO SAC DEVELOPMENT ARREST ...		Lus10024913 [exp]	12.5	0.7498
AT4G30220		RUXF	small nuclear ribonucleoprotei...		Lus10006867 [exp]	12.6	0.7590
AT4G15000			Ribosomal L27e protein family ...		Lus10027314 [exp]	15.2	0.7548
AT5G45190			Cyclin family protein (.1.2)		Lus10040640 [exp]	18.8	0.7187
AT3G10950			Zinc-binding ribosomal protein...		Lus10006414 [exp]	19.4	0.7467

Compare expression of checked genes

Lus10001126 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.