Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042633 [exp] 138 / 5e-44 AT5G67265 45 / 2e-07 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G122800 [exp] 70 / 3e-17 AT5G67265 / unknown protein Potri.007G048400 [exp] 40 / 1e-05 AT5G67265 56 / 7e-12 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001127 pacid=23170020 polypeptide=Lus10001127 locus=Lus10001127.g ID=Lus10001127.BGIv1.0 annot-version=v1.0 ATGAACACAAAAGGGGTAGAGAGGTTGAATGAGGAAGGTGCAATAGAGACCAAAGTGGAGACTGTAGATCGCCGGTCATCGGTAGGGGAAGGAGAAGCCG GGAGAGAAAAGGTTGGAGTTGTTCATCTGCGGCGGAATAATAATGATGATAAGGACTCCTCCAGTACTGCCGGAGGTGTTCTAGCGGGTGCAGCTGCTGC CGTTTCCAACACTTTGAAGTCTGCTAAGGAAGCCATCATGGGTAAAGCCAACAACGGCAACAAGCAGACTGGTGGCACAGATAATCCACAGTGA
AA sequence Show only first row Show all	>Lus10001127 pacid=23170020 polypeptide=Lus10001127 locus=Lus10001127.g ID=Lus10001127.BGIv1.0 annot-version=v1.0 MNTKGVERLNEEGAIETKVETVDRRSSVGEGEAGREKVGVVHLRRNNNDDKDSSSTAGGVLAGAAAAVSNTLKSAKEAIMGKANNGNKQTGGTDNPQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10001127 [exp]	0	1
AT1G75250	MYB	RSM3, ATRL6	RADIALIS-LIKE SANT/MYB 3, RAD-...		Lus10024009 [exp]	6.5	0.8130
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10001776 [exp]	78.8	0.6907
AT4G27420		ABCG9	ATP-binding cassette G9, ABC-2...		Lus10027062 [exp]	91.2	0.6929
AT1G49475	B3		AP2/B3-like transcriptional fa...		Lus10007192 [exp]	143.5	0.6587

Compare expression of checked genes

Lus10001127 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.