Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34215 226 / 5e-74 Domain of unknown function (DUF303) (.1), Domain of unknown function (DUF303) (.2) AT3G53010 220 / 5e-71 Domain of unknown function (DUF303) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014097 [exp] 224 / 4e-73 AT4G34215 326 / 4e-113 Domain of unknown function (DUF303) (.1), Domain of unknown function (DUF303) (.2) Lus10001129 [exp] 225 / 1e-72 AT3G53010 296 / 6e-100 Domain of unknown function (DUF303) (.1) Lus10042634 [exp] 167 / 4e-52 AT4G34215 122 / 7e-35 Domain of unknown function (DUF303) (.1), Domain of unknown function (DUF303) (.2) Lus10042636 [exp] 169 / 2e-51 AT3G53010 220 / 3e-71 Domain of unknown function (DUF303) (.1) Lus10042635 [exp] 151 / 4e-44 AT3G53010 78 / 2e-16 Domain of unknown function (DUF303) (.1) Lus10019817 [exp] 135 / 2e-39 AT4G34215 207 / 7e-68 Domain of unknown function (DUF303) (.1), Domain of unknown function (DUF303) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G022700 [exp] 265 / 3e-89 AT4G34215 282 / 7e-96 Domain of unknown function (DUF303) (.1), Domain of unknown function (DUF303) (.2) Potri.001G300800 [exp] 231 / 1e-75 AT4G34215 311 / 2e-107 Domain of unknown function (DUF303) (.1), Domain of unknown function (DUF303) (.2) Potri.014G022600 [exp] 230 / 9e-75 AT3G53010 301 / 2e-102 Domain of unknown function (DUF303) (.1) Potri.009G096400 [exp] 223 / 8e-73 AT4G34215 315 / 4e-109 Domain of unknown function (DUF303) (.1), Domain of unknown function (DUF303) (.2) Potri.009G096500 [exp] 121 / 2e-34 AT4G34215 117 / 3e-33 Domain of unknown function (DUF303) (.1), Domain of unknown function (DUF303) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF03629 [flax] [poplar] SASA Carbohydrate esterase, sialic acid-specific acetylesterase
Representative CDS sequence Show only first row Show all	>Lus10001128 pacid=23170018 polypeptide=Lus10001128 locus=Lus10001128.g ID=Lus10001128.BGIv1.0 annot-version=v1.0 ATGTCGAAGCTGATGATGTCCACCTTGTTCTGCTCAGTGATAACATTATTATACGAACATGCAGCAGCTTATCCTACAGACATATTCATCCTAGCAGGAC AGAGCAACATGGCAGGGAGAGGAGGAGTGGAGCACGGCAAGTGGAACGGCGTCGTCCCTCAGCTTTCAGCTCCAAACCCGGGCATCCTCCGACTGAGTGC CAGGCTGGAATGGGAAATAGCAAGGGAGCCACTCCACTTGGATATCGACGTGGGAGAAAACAAAACATGTGGGGTGGGGCCAGGTATGGCATTCGCCAAT TCTCTACTTCGAAATTCAAATACAAATAATGATAATAATAGTAGTAGGAGCGGGATGGTGGTTGGGTTGGTTCCTTGTGCGGTGGGAGGCACCGGAATCC GACGGTGGAGAAAAGGGAGGAGGCTGTACCGTGGGATGGTGGCGAGGACGAGAGAGGCATCTAGAAATGGAGGAAGGATTAGGGGGTTATTGTGGTATCA AGGGGAGAGCGATACAGTGCGGAGAGAAGACGCCGAGGGCTACAAATGGAGATTGGAAAAGCTTATTACGGATTTGCGCTCTGATCTTCGCATTCCTTCT CTGCCTATCCTCCTGGTGGCATTGGCATCTGGAGAAGGAAGGTTTGTTGAGCAAGTGAGGAAAGCGCAGCTGGAAATCAAACTTACCAATGTGAAATGCG TAGATGCCAAGGGATTGGGGCTAAAGACAGATCATCTCCACCTCACCACTTCTTCTGAGGTTATGTTGGGTCACAAGCTAGCTCGTCAGTTCTTTTCTTA CTCATTTTAG
AA sequence Show only first row Show all	>Lus10001128 pacid=23170018 polypeptide=Lus10001128 locus=Lus10001128.g ID=Lus10001128.BGIv1.0 annot-version=v1.0 MSKLMMSTLFCSVITLLYEHAAAYPTDIFILAGQSNMAGRGGVEHGKWNGVVPQLSAPNPGILRLSARLEWEIAREPLHLDIDVGENKTCGVGPGMAFAN SLLRNSNTNNDNNSSRSGMVVGLVPCAVGGTGIRRWRKGRRLYRGMVARTREASRNGGRIRGLLWYQGESDTVRREDAEGYKWRLEKLITDLRSDLRIPS LPILLVALASGEGRFVEQVRKAQLEIKLTNVKCVDAKGLGLKTDHLHLTTSSEVMLGHKLARQFFSYSF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34215			Domain of unknown function (DU...		Lus10001128 [exp]	0	1
AT4G35150			O-methyltransferase family pro...		Lus10017699 [exp]	12.6	0.9733
AT1G70580		GGT2, AOAT2	GLUTAMATE:GLYOXYLATE AMINOTRAN...		Lus10036850 [exp]	18.0	0.9723
AT3G61640		AGP20, ATAGP20	arabinogalactan protein 20 (.1...		Lus10032355 [exp]	22.0	0.9714
AT2G04220			Plant protein of unknown funct...		Lus10019467 [exp]	24.8	0.9700
AT1G04100	AUX_IAA	IAA10	indoleacetic acid-induced prot...		Lus10001501 [exp]	29.2	0.9682
AT5G59310		LTP4	lipid transfer protein 4 (.1)		Lus10007280 [exp]	30.4	0.9680
AT1G07750			RmlC-like cupins superfamily p...		Lus10015219 [exp]	31.7	0.8941
AT4G34770			SAUR-like auxin-responsive pro...		Lus10012185 [exp]	34.1	0.9679
AT4G39950		CYP79B2	"cytochrome P450, family 79, s...		Lus10031145 [exp]	36.0	0.9675
AT1G67560		ATLOX6, LOX6	Arabidopsis thaliana lipoxygen...		Lus10006429 [exp]	36.0	0.9450

Compare expression of checked genes

Lus10001128 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.