Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53010 295 / 8e-100 Domain of unknown function (DUF303) (.1) AT4G34215 257 / 4e-85 Domain of unknown function (DUF303) (.1), Domain of unknown function (DUF303) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042636 [exp] 452 / 5e-162 AT3G53010 220 / 3e-71 Domain of unknown function (DUF303) (.1) Lus10014097 [exp] 268 / 2e-89 AT4G34215 326 / 4e-113 Domain of unknown function (DUF303) (.1), Domain of unknown function (DUF303) (.2) Lus10001128 [exp] 257 / 6e-85 AT4G34215 260 / 4e-87 Domain of unknown function (DUF303) (.1), Domain of unknown function (DUF303) (.2) Lus10019817 [exp] 176 / 8e-55 AT4G34215 207 / 7e-68 Domain of unknown function (DUF303) (.1), Domain of unknown function (DUF303) (.2) Lus10042634 [exp] 123 / 2e-34 AT4G34215 122 / 7e-35 Domain of unknown function (DUF303) (.1), Domain of unknown function (DUF303) (.2) Lus10042635 [exp] 81 / 4e-17 AT3G53010 78 / 2e-16 Domain of unknown function (DUF303) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G022600 [exp] 326 / 8e-112 AT3G53010 301 / 2e-102 Domain of unknown function (DUF303) (.1) Potri.014G022700 [exp] 277 / 3e-93 AT4G34215 282 / 7e-96 Domain of unknown function (DUF303) (.1), Domain of unknown function (DUF303) (.2) Potri.009G096400 [exp] 267 / 2e-89 AT4G34215 315 / 4e-109 Domain of unknown function (DUF303) (.1), Domain of unknown function (DUF303) (.2) Potri.001G300800 [exp] 256 / 7e-85 AT4G34215 311 / 2e-107 Domain of unknown function (DUF303) (.1), Domain of unknown function (DUF303) (.2) Potri.009G096500 [exp] 113 / 9e-31 AT4G34215 117 / 3e-33 Domain of unknown function (DUF303) (.1), Domain of unknown function (DUF303) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF03629 [flax] [poplar] SASA Carbohydrate esterase, sialic acid-specific acetylesterase
Representative CDS sequence Show only first row Show all	>Lus10001129 pacid=23170022 polypeptide=Lus10001129 locus=Lus10001129.g ID=Lus10001129.BGIv1.0 annot-version=v1.0 ATGGAAATCATCCCTCCATTAACTTTTCTAATCCTTCTCATCATCAACCACGCCATTGTGCCAATCCTCTCCTCTTCCTCGCCTGAAAACATTTTCATTC TGGCCGGACAGAGCAACATGGCCGGCCGCGGCGGGGTCTTCAACGACACAGGGGCCACCGCGAAAATGCAGTGGGACGGCATCGTGCCAGCCCAGTGCCA GCCGAACCCGTCGATCCTACGGTTGAGCAAAGAACTGATGTGGGTCACGGGTCAGGAACCGCTACATGCCGACATCGATTTCACAAAGACAAACGGAGTC GGGCCGGGTATGGCTTTCGGAAACGCGCTGGTGACCCAGGACCCGGCAGTGGGAGTTGTGGGCCTCGTTCCCTGCGCCATTGGAGGGACCACGATAAATC AGTGGGAGAAGGGGGGCCAACTGTATGGGGAATTGATAAAGAGGAGTGAGGCCGCGGTGGCGATCGGAGGAGGAAAGATCCGTGCTCTGCTTTGGTATCA AGGGGAGAGCGATACTAACAGTAGAGAGGACGCCGATCAGTATAAAGGTAGATTGGAGACGTTTTTTTACCATGTGAGGCAAGATTTGCAGCTTCCCTCG CTTCCAATTATCCAGGTGGCTTTGGCGTCGTCGGAGGGCCCGTTCAAGGAGACGGTGAGAAATGCTCAGCTAGGAATTAGCATGACGAATTTGGTAACGG TGGACGCGGACGGGTTACCGATTGGACCCGACGGACTGCATCTGACAACGGCGTCACAAGTTCAACTGGGTCACATGTTGGCTGATGCATTTATGAAGGC CAAGTTCAGGAAACCTACGATCCGAACTAGTCTTCAATCCAGCAGCTATTCGCCACCGACGACGAATTCTGCCGGCGTGTTGGTGGTTCCATTGTTGACG GCGGCTTTTGTTTTTAGTTTAAACATTGGGCTTATAGGAAGGACTTGCTACTCGTAG
AA sequence Show only first row Show all	>Lus10001129 pacid=23170022 polypeptide=Lus10001129 locus=Lus10001129.g ID=Lus10001129.BGIv1.0 annot-version=v1.0 MEIIPPLTFLILLIINHAIVPILSSSSPENIFILAGQSNMAGRGGVFNDTGATAKMQWDGIVPAQCQPNPSILRLSKELMWVTGQEPLHADIDFTKTNGV GPGMAFGNALVTQDPAVGVVGLVPCAIGGTTINQWEKGGQLYGELIKRSEAAVAIGGGKIRALLWYQGESDTNSREDADQYKGRLETFFYHVRQDLQLPS LPIIQVALASSEGPFKETVRNAQLGISMTNLVTVDADGLPIGPDGLHLTTASQVQLGHMLADAFMKAKFRKPTIRTSLQSSSYSPPTTNSAGVLVVPLLT AAFVFSLNIGLIGRTCYS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G53010			Domain of unknown function (DU...		Lus10001129 [exp]	0	1
AT1G01430		TBL25	TRICHOME BIREFRINGENCE-LIKE 25...		Lus10029454 [exp]	2.0	0.9076
AT1G27500			Tetratricopeptide repeat (TPR)...		Lus10002376 [exp]	5.3	0.9092
AT3G51780		ATBAG4	BCL-2-associated athanogene 4 ...		Lus10027822 [exp]	8.9	0.9014
AT1G48780			unknown protein		Lus10009633 [exp]	12.0	0.8990
AT1G01430		TBL25	TRICHOME BIREFRINGENCE-LIKE 25...		Lus10005952 [exp]	15.2	0.8615
AT5G11730			Core-2/I-branching beta-1,6-N-...		Lus10007457 [exp]	17.4	0.8527
AT3G51780		ATBAG4	BCL-2-associated athanogene 4 ...		Lus10005051 [exp]	18.0	0.8952
AT1G13900			Purple acid phosphatases super...		Lus10004661 [exp]	20.1	0.9048
AT3G09410			Pectinacetylesterase family pr...		Lus10024398 [exp]	20.7	0.8888
AT3G52525	OFP	ATOFP6, OFP6	ARABIDOPSIS THALIANA OVATE FAM...		Lus10013318 [exp]	26.4	0.8591

Compare expression of checked genes

Lus10001129 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.