Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67090 560 / 0 Subtilisin-like serine endopeptidase family protein (.1) AT3G14240 506 / 6e-169 Subtilase family protein (.1) AT5G67360 503 / 2e-168 ARA12 Subtilase family protein (.1) AT3G14067 503 / 6e-168 Subtilase family protein (.1) AT2G05920 491 / 2e-163 Subtilase family protein (.1) AT4G34980 486 / 2e-161 SLP2 subtilisin-like serine protease 2 (.1) AT5G51750 476 / 1e-157 ATSBT1.3 subtilase 1.3 (.1) AT1G04110 473 / 4e-156 SDD1 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) AT1G01900 457 / 3e-150 SBTI1.1, ATSBT1.1 subtilase family protein (.1) AT2G04160 412 / 6e-133 AIR3 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009748 [exp] 1070 / 0 AT5G67090 601 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10042644 [exp] 1067 / 0 AT5G67090 413 / 5e-136 Subtilisin-like serine endopeptidase family protein (.1) Lus10009365 [exp] 634 / 0 AT5G67090 637 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10024815 [exp] 620 / 0 AT5G67090 543 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10018721 [exp] 556 / 0 AT5G67360 531 / 7e-179 Subtilase family protein (.1) Lus10024814 [exp] 536 / 0 AT3G14240 504 / 3e-169 Subtilase family protein (.1) Lus10027891 [exp] 527 / 9e-177 AT5G67360 531 / 3e-178 Subtilase family protein (.1) Lus10002392 [exp] 518 / 3e-173 AT5G67360 530 / 3e-178 Subtilase family protein (.1) Lus10036546 [exp] 508 / 7e-170 AT1G01900 822 / 0.0 subtilase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G124500 [exp] 875 / 0 AT5G67090 577 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.014G026700 [exp] 870 / 0 AT5G67090 582 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.014G026500 [exp] 834 / 0 AT5G67090 604 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.007G045100 [exp] 766 / 0 AT5G67090 727 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.009G100500 [exp] 576 / 0 AT4G34980 541 / 0.0 subtilisin-like serine protease 2 (.1) Potri.014G026600 [exp] 554 / 0 AT5G67360 546 / 0.0 Subtilase family protein (.1) Potri.001G163600 [exp] 521 / 6e-175 AT3G14240 1174 / 0.0 Subtilase family protein (.1) Potri.003G071800 [exp] 520 / 1e-174 AT3G14240 1199 / 0.0 Subtilase family protein (.1) Potri.004G173900 [exp] 520 / 2e-174 AT4G34980 1108 / 0.0 subtilisin-like serine protease 2 (.1) Potri.014G074600 [exp] 516 / 7e-173 AT1G01900 788 / 0.0 subtilase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0570 [flax] [poplar] PPP-I PF05922 [flax] [poplar] Inhibitor_I9 Peptidase inhibitor I9 CL0570 [flax] [poplar] PF00082 [flax] [poplar] Peptidase_S8 Subtilase family
Representative CDS sequence Show only first row Show all	>Lus10001130 pacid=23170017 polypeptide=Lus10001130 locus=Lus10001130.g ID=Lus10001130.BGIv1.0 annot-version=v1.0 ATGGCCTTACCAATCCATTCCTATGCTTCGGCACTCATTTCTAGCATTATGGTCACCCTTGTTGCATTCTCCCAAGAAGTTGACCACCAATACATAGTTT TCATGGACTCTAGTGCCATGCCAAAAGCCTTCTCCACTCAACAACACTGGCACTTGGCCACTCTTGACTCTGTTTCAGTTTCTCCAAAACTTATTTACAG CTACACTCATGTCATTAATGGGTTTAGTGCTACACTATCCCCTTCCGAGTTATCCGCCTTGCAAACTTCTCCTGGATTCCTGCACTCCATAAAGGACTTG CCTGTCAAACACGACACTACTCATTCAACCGAGTTTATCGGCCTCTCAGGTACCGCCGCCGGAGCTTGGAAGTCTACCAATTATGGGGAAGGGATGATCA TTGGGGTCATTGATACAGGAGTCTGGCCGGAAAGTCAAAGCTACAACGACCACGGTGTGCCTCCTGTCCCAGCCAGATGGAAAGGAGAATGTGAAACAGG AACCCAATTCAACAGTTCCCTATGCAACAACAAGCTCATTGGAGCTCGGGCATGCAACAGAGGTCTTATCGCTAGAAACATCTCTATAACCATGAACTCC GCTCGTGACACCGACGGACACGGCACCCACACGTCCAGCACGGCCGCCGGTAGTTTTGTCGATGGGGCGTCCTACTTCGGCTACGCCCCTGGAATTCTAA AAGGTGTAGCTCCAAAGGCACACGTGGCTATGTACAAGGCCCTGTTTGACGAAGGCGCTTTCGCATCAGACATCATTGCGGCAATTGATCGAGCACTTGG CGACGGTGTTGATGTCATATCACTCTCTCTTGGATTGGACGGCGTCGCCTTGTATGAGGACCCACTCGCCCTGGCCACTTTTGCCGCAGTTGAGAAGAAC GTGTTCGTTGCTACTTCTGCCGGCAACCAAGGCCCTTTTCTCCAGTCTCTCCACAACGGCATTCCCTGGGTATTGACCGTCGCAGCCGGGGCAATTGACC GGGAATTTCAAGCCGAGGTCAAGCTCGGAAACGGAGTTTCCGTTTCTGGTTCGTCTCTGTACCCAGGAAACTACTCCGCCAGCATAGCTCCGATTGTCTT CATGGGAGATTGTCTTAACGCGACGAAAATAAGGGGAATGACGAGCGGCAACATCGTGGTGTGCGAAGATAAGAACTCTACACTGAGAGAGCAGTTAGAA AACGTTCAGAATTCCAGCGCGGCCGGCGGCGTTTTCATAGCCAACGTTTCGTCTTCGGATCTCGAATTCTTAATGCAGTCCCCGTTTCAAGCGATTTTCA TGACGTCGCTAGGAGAGGGCGAGAAGGTGAAGAAGTACGTCAAGAGCAGTAACAAACCAAAAGCAAACTTGAAGTTCCGAGTAACGAATTTGAGCGCGAA ACCAGCACCGACAGTTACGAGTTACAGCTCCAGGGGACCATCTCCTAGCTGCAAGGTCGTACTGAAGCCCGACATCATGGGTCCTGGCTCATTGATCTTA GCAGCTTGGCCTTCCAATGTAGAAGCCACCGAGGTTAGATCGAAGCCTCTGTACACAGATTTCAATCTATTGTCCGGTACGTCAATGTCAACCCCGCATT TAGCCGGAGTTGGGGCGCTCATTAAAAAGGCACATCCAGACTGGAGCCCTGCAGCCGTACGATCGGCAATGATGACAACCGCCGATGCCACGGATCTATC TGGTCAGCCGATTCAGGATTTGGGTACCGATAATAATAGTCCAGCCACGGGTTTAGCCATTGGAGCGGGTCAGGTCAACCCGAACAAAGCACTGGACCCG GGTCTAATATATGATGTGAACACAACCGATTACGTCAACCTGCTTTGTGGGCTCAATTTCACGGCAAAGCAAATCCAAGCCATCACAGGCTCATCGTCAT CTACCAATAATTGTGATTCCCCGTCCCTAGATCTTAATTATCCATCGTTCATAGCCTTTTTCGAGGCAAACACCTCCCATTCTCCTAATCAAGTAATGGA GTTCCATAGGACGGTGACTAATGTGGGTGATGAAGGAATGACGGCTAGTTATGAAGCAGCTTTGACTCCGTTGGAAGGGTTGCATGTTAGTGTGATACCG AGTAAGCTGGAGTTCAAAGCCAAAGGGGAAAAGCTTAGCTTCAAGCTGGTGGTTGAAAGTGTTGGGGTTATGAAGAAATTGTATGTAAGCTCGGGTTATC TCAAATGGATAGAAGATGGAGGGAATCATGTTGTGCAAAGTCCAATAGTGGCCACTAACATCAACTTCCAGTCATTCTCGTCTCCAAAGAACTAG
AA sequence Show only first row Show all	>Lus10001130 pacid=23170017 polypeptide=Lus10001130 locus=Lus10001130.g ID=Lus10001130.BGIv1.0 annot-version=v1.0 MALPIHSYASALISSIMVTLVAFSQEVDHQYIVFMDSSAMPKAFSTQQHWHLATLDSVSVSPKLIYSYTHVINGFSATLSPSELSALQTSPGFLHSIKDL PVKHDTTHSTEFIGLSGTAAGAWKSTNYGEGMIIGVIDTGVWPESQSYNDHGVPPVPARWKGECETGTQFNSSLCNNKLIGARACNRGLIARNISITMNS ARDTDGHGTHTSSTAAGSFVDGASYFGYAPGILKGVAPKAHVAMYKALFDEGAFASDIIAAIDRALGDGVDVISLSLGLDGVALYEDPLALATFAAVEKN VFVATSAGNQGPFLQSLHNGIPWVLTVAAGAIDREFQAEVKLGNGVSVSGSSLYPGNYSASIAPIVFMGDCLNATKIRGMTSGNIVVCEDKNSTLREQLE NVQNSSAAGGVFIANVSSSDLEFLMQSPFQAIFMTSLGEGEKVKKYVKSSNKPKANLKFRVTNLSAKPAPTVTSYSSRGPSPSCKVVLKPDIMGPGSLIL AAWPSNVEATEVRSKPLYTDFNLLSGTSMSTPHLAGVGALIKKAHPDWSPAAVRSAMMTTADATDLSGQPIQDLGTDNNSPATGLAIGAGQVNPNKALDP GLIYDVNTTDYVNLLCGLNFTAKQIQAITGSSSSTNNCDSPSLDLNYPSFIAFFEANTSHSPNQVMEFHRTVTNVGDEGMTASYEAALTPLEGLHVSVIP SKLEFKAKGEKLSFKLVVESVGVMKKLYVSSGYLKWIEDGGNHVVQSPIVATNINFQSFSSPKN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67090			Subtilisin-like serine endopep...		Lus10001130 [exp]	0	1
AT2G24190		SDR2	short-chain dehydrogenase/redu...		Lus10019546 [exp]	11.0	0.7167
AT1G72520		ATLOX4, LOX4	Arabidopsis thaliana lipoxygen...		Lus10027379 [exp]	11.4	0.6855
AT3G26700			Protein kinase superfamily pro...		Lus10041509 [exp]	18.3	0.7760
AT2G32580			Protein of unknown function (D...		Lus10029975 [exp]	24.4	0.7237
AT2G42380	bZIP	ATBZIP34	Basic-leucine zipper (bZIP) tr...		Lus10017656 [exp]	41.7	0.7375
AT5G58300			Leucine-rich repeat protein ki...		Lus10003891 [exp]	55.5	0.6518
AT5G58300			Leucine-rich repeat protein ki...		Lus10034446 [exp]	66.6	0.6623
AT3G62830		ATUXS2, UXS2, A...	UDP-GLUCURONIC ACID DECARBOXYL...		Lus10006510 [exp]	77.2	0.6932
AT5G38790			unknown protein		Lus10034101 [exp]	82.6	0.7176
AT2G04160		AIR3	AUXIN-INDUCED IN ROOT CULTURES...		Lus10016064 [exp]	95.8	0.7077

Compare expression of checked genes

Lus10001130 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.