Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G45976 357 / 2e-123 SBP1 S-ribonuclease binding protein 1 (.1) AT1G60610 126 / 1e-33 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2), SBP (S-ribonuclease binding protein) family protein (.3) AT1G10650 118 / 5e-31 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) AT4G17680 81 / 2e-17 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) AT3G12920 79 / 4e-16 BRG3 BOI-related gene 3, SBP (S-ribonuclease binding protein) family protein (.1) AT1G32740 77 / 9e-16 SBP (S-ribonuclease binding protein) family protein (.1) AT5G47050 74 / 9e-15 SBP (S-ribonuclease binding protein) family protein (.1) AT4G35070 72 / 9e-15 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013027 [exp] 130 / 9e-35 AT1G10650 382 / 3e-133 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Lus10030597 [exp] 127 / 1e-33 AT1G10650 380 / 3e-132 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Lus10030599 [exp] 126 / 2e-33 AT1G10650 380 / 4e-132 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Lus10030891 [exp] 124 / 4e-33 AT1G10650 275 / 1e-92 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Lus10029136 [exp] 102 / 7e-25 AT1G10650 314 / 7e-107 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Lus10031780 [exp] 67 / 2e-12 AT3G12920 260 / 3e-85 BOI-related gene 3, SBP (S-ribonuclease binding protein) family protein (.1) Lus10031202 [exp] 55 / 3e-08 AT3G12920 255 / 3e-83 BOI-related gene 3, SBP (S-ribonuclease binding protein) family protein (.1) Lus10017276 [exp] 52 / 1e-07 AT4G35070 122 / 2e-34 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Lus10013569 [exp] 47 / 1e-05 AT4G35070 125 / 1e-34 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G027000 [exp] 451 / 6e-160 AT1G45976 380 / 2e-132 S-ribonuclease binding protein 1 (.1) Potri.002G124700 [exp] 426 / 4e-150 AT1G45976 378 / 2e-131 S-ribonuclease binding protein 1 (.1) Potri.010G042200 [exp] 125 / 4e-33 AT1G10650 393 / 2e-137 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Potri.012G082200 [exp] 118 / 2e-30 AT1G10650 266 / 2e-87 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Potri.003G085800 [exp] 89 / 1e-19 AT1G32740 220 / 9e-70 SBP (S-ribonuclease binding protein) family protein (.1) Potri.001G148600 [exp] 84 / 3e-18 AT1G32740 221 / 4e-70 SBP (S-ribonuclease binding protein) family protein (.1) Potri.001G439600 [exp] 71 / 1e-13 AT3G12920 256 / 1e-83 BOI-related gene 3, SBP (S-ribonuclease binding protein) family protein (.1) Potri.011G142700 [exp] 63 / 5e-11 AT3G12920 233 / 1e-74 BOI-related gene 3, SBP (S-ribonuclease binding protein) family protein (.1) Potri.004G175500 [exp] 61 / 3e-10 AT4G35070 142 / 1e-41 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Potri.009G135400 [exp] 60 / 3e-10 AT4G35070 135 / 6e-39 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001131 pacid=23170016 polypeptide=Lus10001131 locus=Lus10001131.g ID=Lus10001131.BGIv1.0 annot-version=v1.0 ATGTATCAGAGCGTGGTTGTCTTCTACCAGTATCAGTGTGCTACTTGCTCCTCAAAGACGTCACAAACCTCAGAGGGGAGAAGAAGCTTGTACGCACTTG AGGGTCAGATTCCACCGCCTGTCGGGTTTTACCACCCTCCAAGTTTGCAGGACCAGTCTCAGCATCCTCCATATATTCCTCCTCCCTTTCATGTGGTGGG ATTTGCGCCTGTACCTGGTCCTGCTAATAATGGTAGCGATGGAGGAATTGATTTACAGTGGAATTATGGGATTGAACCAAAGAGGAAAAGATTGAAGGAG CAGGACTTCTTGGAGAATAATTCCCATATTTCATCAATTGACTTCTTGCAAGTTCGTTCTGTTTCAACGGGCTTAGGGTTATCCCTTGATAACAATCATG CTTCATGTTCTACTGGCTCAACATTGATGGCACTCGTTGGTGAAGATATCGATCGTGAGTTACAACGACAGGATGAAGAGATTAACAGATTCCTCAAAGT TCAGGGTGATCGATTGAGACAAAACGTCTTAGAAAAGATCCAAACGCACCAAGTCCAGACCATCTCATTATTGGAAGACAAGATTGTGCATAAACTCCGA TCAAAGGAAGCTGAAATGGAAAGTATTAACAAGAAGAATTTGGAACTAGAAGAGAGGATGGAACAGATCTCTGCAGAATCAGGGGCTTGGGAGCAACGAG CGAGATTCAACGAAAACCTGATAAGCGCCCTAAAGTCGAATCTCCAGCAGGTTTATGCTCAAAGTAGGGACAGTAAAGAAGGATGCGGGGACAGCGAGGT GGATGACACAGCTTCATGCTGTAACGGACCTGGGATTGATTTCCAGATACTTGCCAAGGAGAAGGAGATGAAAGAGGGGATGGCGTGTAAGGTTTGCAGA GTGAAGGAGGTATGCATGCTTCTATTGCCGTGTAAGCATCTCTGCCTATGTAAAGAGTGTGAAAGTAAGCTTAGCTTCTGTCCACTGTGTCAGTCGTCCA AGTTTCTTGGGATGGAAGTCTATATGTAA
AA sequence Show only first row Show all	>Lus10001131 pacid=23170016 polypeptide=Lus10001131 locus=Lus10001131.g ID=Lus10001131.BGIv1.0 annot-version=v1.0 MYQSVVVFYQYQCATCSSKTSQTSEGRRSLYALEGQIPPPVGFYHPPSLQDQSQHPPYIPPPFHVVGFAPVPGPANNGSDGGIDLQWNYGIEPKRKRLKE QDFLENNSHISSIDFLQVRSVSTGLGLSLDNNHASCSTGSTLMALVGEDIDRELQRQDEEINRFLKVQGDRLRQNVLEKIQTHQVQTISLLEDKIVHKLR SKEAEMESINKKNLELEERMEQISAESGAWEQRARFNENLISALKSNLQQVYAQSRDSKEGCGDSEVDDTASCCNGPGIDFQILAKEKEMKEGMACKVCR VKEVCMLLLPCKHLCLCKECESKLSFCPLCQSSKFLGMEVYM

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G45976		SBP1	S-ribonuclease binding protein...		Lus10001131 [exp]	0	1
AT3G07370		ATCHIP, CHIP	carboxyl terminus of HSC70-int...		Lus10020412 [exp]	2.6	0.8537
AT3G16380		PAB6	poly(A) binding protein 6 (.1)		Lus10038840 [exp]	2.6	0.8875
AT1G03760			Prefoldin chaperone subunit fa...		Lus10033671 [exp]	5.7	0.8381
AT1G17130			Family of unknown function (DU...		Lus10013707 [exp]	7.4	0.8496
AT3G14160			2-oxoglutarate-dependent dioxy...		Lus10033471 [exp]	11.4	0.8721
AT3G59990		MAP2B	methionine aminopeptidase 2B (...		Lus10010592 [exp]	12.0	0.8528
					Lus10011965 [exp]	15.2	0.8352
AT1G72175			RING/U-box protein with domain...		Lus10020349 [exp]	17.0	0.8763
AT1G17130			Family of unknown function (DU...		Lus10005575 [exp]	20.2	0.8635
AT1G68310		AE7	AS1/2 ENHANCER7, Protein of un...		Lus10031006 [exp]	28.5	0.8623

Compare expression of checked genes

Lus10001131 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.