Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G46264 275 / 5e-90 HSF SCZ, AT-HSFB4 SCHIZORIZA, heat shock transcription factor B4 (.1) AT4G11660 179 / 1e-52 HSF AT-HSFB2B, HSFB2B HEAT SHOCK TRANSCRIPTION FACTOR B2B, winged-helix DNA-binding transcription factor family protein (.1) AT5G62020 176 / 4e-52 HSF AT-HSFB2A ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR B2A, heat shock transcription factor B2A (.1) AT4G36990 167 / 6e-49 HSF AT-HSFB1, ATHSF4, HSF4, HsfB1 ARABIDOPSIS THALIANA HEAT SHOCK FACTOR 4, ARABIDOPSIS THALIANA CLASS B HEAT SHOCK FACTOR B1, heat shock factor 4 (.1) AT4G17750 162 / 6e-45 HSF ATHSFA1A, ATHSF1, HSF1 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1A, ARABIDOPSIS THALIANA HEAT SHOCK FACTOR 1, heat shock factor 1 (.1) AT1G32330 157 / 3e-43 HSF ATHSFA1D heat shock transcription factor A1D (.1) AT3G22830 148 / 2e-40 HSF AT-HSFA6B ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) AT3G24520 144 / 1e-39 HSF AT-HSFC1 heat shock transcription factor C1 (.1) AT3G02990 147 / 2e-39 HSF ATHSFA1E heat shock transcription factor A1E (.1) AT2G41690 141 / 2e-39 HSF AT-HSFB3, HSFB3 HEAT SHOCK TRANSCRIPTION FACTOR B3, heat shock transcription factor B3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042646 [exp] 555 / 0 AT1G46264 308 / 8e-103 SCHIZORIZA, heat shock transcription factor B4 (.1) Lus10036062 [exp] 205 / 6e-63 AT1G46264 245 / 3e-79 SCHIZORIZA, heat shock transcription factor B4 (.1) Lus10008007 [exp] 194 / 5e-58 AT4G11660 306 / 3e-102 HEAT SHOCK TRANSCRIPTION FACTOR B2B, winged-helix DNA-binding transcription factor family protein (.1) Lus10024508 [exp] 187 / 4e-55 AT4G11660 308 / 3e-102 HEAT SHOCK TRANSCRIPTION FACTOR B2B, winged-helix DNA-binding transcription factor family protein (.1) Lus10019348 [exp] 174 / 2e-51 AT4G36990 254 / 3e-84 ARABIDOPSIS THALIANA HEAT SHOCK FACTOR 4, ARABIDOPSIS THALIANA CLASS B HEAT SHOCK FACTOR B1, heat shock factor 4 (.1) Lus10014994 [exp] 174 / 3e-51 AT5G62020 259 / 2e-85 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR B2A, heat shock transcription factor B2A (.1) Lus10026819 [exp] 164 / 5e-49 AT1G46264 167 / 2e-51 SCHIZORIZA, heat shock transcription factor B4 (.1) Lus10000312 [exp] 169 / 1e-47 AT1G32330 437 / 1e-150 heat shock transcription factor A1D (.1) Lus10009351 [exp] 163 / 2e-47 AT4G36990 248 / 1e-81 ARABIDOPSIS THALIANA HEAT SHOCK FACTOR 4, ARABIDOPSIS THALIANA CLASS B HEAT SHOCK FACTOR B1, heat shock factor 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G027100 [exp] 324 / 1e-108 AT1G46264 335 / 9e-114 SCHIZORIZA, heat shock transcription factor B4 (.1) Potri.002G124800 [exp] 323 / 2e-108 AT1G46264 353 / 7e-121 SCHIZORIZA, heat shock transcription factor B4 (.1) Potri.001G273700 [exp] 202 / 2e-62 AT1G46264 251 / 2e-82 SCHIZORIZA, heat shock transcription factor B4 (.1) Potri.009G068000 [exp] 197 / 2e-60 AT1G46264 258 / 4e-85 SCHIZORIZA, heat shock transcription factor B4 (.1) Potri.001G108100 [exp] 191 / 2e-57 AT4G11660 285 / 2e-94 HEAT SHOCK TRANSCRIPTION FACTOR B2B, winged-helix DNA-binding transcription factor family protein (.1) Potri.007G043800 [exp] 179 / 2e-53 AT4G36990 241 / 3e-79 ARABIDOPSIS THALIANA HEAT SHOCK FACTOR 4, ARABIDOPSIS THALIANA CLASS B HEAT SHOCK FACTOR B1, heat shock factor 4 (.1) Potri.012G138900 [exp] 169 / 3e-49 AT5G62020 230 / 2e-74 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR B2A, heat shock transcription factor B2A (.1) Potri.015G141100 [exp] 167 / 7e-49 AT5G62020 233 / 8e-76 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR B2A, heat shock transcription factor B2A (.1) Potri.001G138900 [exp] 172 / 2e-48 AT1G32330 408 / 2e-138 heat shock transcription factor A1D (.1) Potri.016G056500 [exp] 160 / 1e-46 AT2G41690 218 / 1e-71 HEAT SHOCK TRANSCRIPTION FACTOR B3, heat shock transcription factor B3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00447 [flax] [poplar] HSF_DNA-bind HSF-type DNA-binding
Representative CDS sequence Show only first row Show all	>Lus10001133 pacid=23170019 polypeptide=Lus10001133 locus=Lus10001133.g ID=Lus10001133.BGIv1.0 annot-version=v1.0 ATGGCACTGATAGTGGAGAACTCGGCATCATCATCATGCGGAGTCGACGGCGGGATGTTGCTGTCACTGGAATCCCAGAAGTCGGTGCCGGCTCCATTCC TCACCAAGACTTACCAGCTTGTTGACGACCCTTCCACCGACCATATCGTGTCTTGGGGAGAAGACCACTCTACTTTCATCGTCTGGCGTCCACCTGAATT CGCACGCGACCTCCTCCCTAACTACTTCAAGCACAACAACTTTTCCTCCTTCGTCCGCCAGCTCAACACCTACGGGTTTAGGAAAATAGTGCCGGATAGA TGGGAATTCGCCAACGACTTCTTCAAGAAGGGCGAAAAACACTTGCTCTGCGAAATCCACCGCAGAAAGACAGCTCAGCTTCCTCCGCCTCCTCCGCCGC ATCACCACCACCATCATCATCCGGCCGGTGGCTTCTTCCCTTTCTCGACCAACCGCCTCAGCATCTCTCCATCCGACGACGCTGACGACCACTACTTCCA ACACAATCACAATAACTGGTCCCCTCCGTCGGGAACTTTATCAGGGCTAATGGGACCCACCAGCATGATGAGCAACGGGGGAGGAGTGTACTACACCACC GGTGATGGTAGTAGTAGTGGTAATACTAATAGTGCAGCAGGGACGGTGACGGCGTTATCACAGGATAACGAGAGGCTGCGGAGGAGCAACAATATGCTGA TGACGGAGTTATCTCACATGAAGAAGCTTTACAACGACATCATCTATTTTGTTCAGAACCACGTCAAGCCCGTCCCTCCTCCCACGCCTAATAAGGCTCC TCCGTTAAACCAGCTGCTGCTTGGTGGTGGATATAACAACAACAATAACAATAATATGAGTACGATGATGATGATGAAGAAAGGGCAATCAGGTGCTCCC CAGGTTCAAGTGCTGGGTACTAATACCACTACTACTATAACATCTCCAAGCTACAGTAGTAACAAGAGCAGCAACAACTCCCACAGTACTGTCACCATTA TTGAAGAAATTGAAGGGTGCAACAACAACAACACCAAGTTGTTTGGAGTGGCCATTAATAATAATCATCATCATAATCAGTCTTCCAAGAAGAGATTGCA CCCGGACCATGACTACGCCATCAATCATCAGACTAGTAGTAGTAGTAAGTCTCACCGTTTGGTTTTGGAAAAGGATGATTTGGGTTTGAACCTAATGCCT CCTTCTCCTTGTTAG
AA sequence Show only first row Show all	>Lus10001133 pacid=23170019 polypeptide=Lus10001133 locus=Lus10001133.g ID=Lus10001133.BGIv1.0 annot-version=v1.0 MALIVENSASSSCGVDGGMLLSLESQKSVPAPFLTKTYQLVDDPSTDHIVSWGEDHSTFIVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR WEFANDFFKKGEKHLLCEIHRRKTAQLPPPPPPHHHHHHHPAGGFFPFSTNRLSISPSDDADDHYFQHNHNNWSPPSGTLSGLMGPTSMMSNGGGVYYTT GDGSSSGNTNSAAGTVTALSQDNERLRRSNNMLMTELSHMKKLYNDIIYFVQNHVKPVPPPTPNKAPPLNQLLLGGGYNNNNNNNMSTMMMMKKGQSGAP QVQVLGTNTTTTITSPSYSSNKSSNNSHSTVTIIEEIEGCNNNNTKLFGVAINNNHHHNQSSKKRLHPDHDYAINHQTSSSSKSHRLVLEKDDLGLNLMP PSPC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G46264	HSF	SCZ, AT-HSFB4	SCHIZORIZA, heat shock transcr...		Lus10001133 [exp]	0	1
AT5G17980			C2 calcium/lipid-binding plant...		Lus10010658 [exp]	1.4	0.9236
AT4G20270		BAM3	BARELY ANY MERISTEM 3, Leucine...		Lus10036242 [exp]	2.0	0.9247
AT2G37590	DOF	AtDof2. 4, ATDO...	DNA binding with one finger 2....		Lus10025340 [exp]	3.2	0.9006
AT5G52430			hydroxyproline-rich glycoprote...		Lus10028779 [exp]	3.3	0.8773
AT3G52490			Double Clp-N motif-containing ...		Lus10028849 [exp]	3.9	0.9189
AT3G52490			Double Clp-N motif-containing ...		Lus10016966 [exp]	5.7	0.9059
AT2G27035		AtENODL20	early nodulin-like protein 20 ...		Lus10005229 [exp]	7.3	0.8996
AT1G62360	HD	WAM1, WAM, SHL,...	WALDMEISTER 1, WALDMEISTER, SH...		Lus10035320 [exp]	8.4	0.8804
AT3G52490			Double Clp-N motif-containing ...		Lus10021291 [exp]	9.2	0.8881
AT4G31140			O-Glycosyl hydrolases family 1...		Lus10024535 [exp]	10.1	0.8279

Compare expression of checked genes

Lus10001133 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.