Plant FIBer expression Database

Lus10001135 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10022266
[exp]
567 / 2e-180 AT5G40450 69 / 7e-11 unknown protein
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10001135 pacid=23180524 polypeptide=Lus10001135 locus=Lus10001135.g ID=Lus10001135.BGIv1.0 annot-version=v1.0
ATGGCTAGTAGTGAAGTTGAACAGATCGTGGAACCTCTTCCTATCTCGGAAGTAGAAGGGGTGGAGAGCAGGTACCTGAGAGCTGAGGTTGAAGCTGCTG
TGAGCATAGTCAAATCCAATGAAATCCAACTCCACCATACTTCTCCTCAACAAGACTCTGCTGGTTTTCTAGAAAAGCCCATTTCCGAGGTTGATAATTT
TTTGGAATCATCCTCGGACGGCATCAATAAGGCTTCTTCTGGTGAGGTAAGTGGTCAAGTTTTGGTAGGTATTGAGAAGATGAGCACTGAAGCCAAGGAA
TCAGAGGTTGAGGACCAGCTCAAGGAAGCCAAGAAGTTAGTAACAGAAGAAGTACAAGCGCCAGAGATTCTTGACAAGTCAGGTGAAGCAAAAAGAGAAG
AAGAAATATCAGATAATGGAGTTCAGCTGGAAAATTACAGCCGTCATCTACTAATTAGAGTATGTGCTGCAGGCAATGATGATGCAACTGAGGCACTGGA
TACAGCAGTGAGCAGCAAAGACAGGTCCATCGGCATTGTTAAACAAGAGGAGGTGCATGATGAATCTCAGACCACAAGCATAGGAGAGACTGCTAACGAG
ACGGTACATGCTGAAAGTCGGGTAGAGAAAGAAGAGATCCCAGGAAATGATGTTGTTGATCATGTCCAAGTACAACAGCCTTTGAAAGAAGCAGGAACTC
TTCAGGACTCTCAAACTGATGATCCAAGTCCTGATCCAAAGCTACACATTTCACCTGATGCAGAAATGGAAGGCCTGGAAAGTGTTGGACCAACTCCATC
ACCAGTAGAGGAAAACAATGAGGTGACTAAGGAGGAGGAACCAGAGACTGGAGGAATTGTTGAACAAGGAGAAACTGTCGAGACCCCGCAGGACAAACTC
GATGATTCAGAAGAAACGAATGAAGAGGCAGAGGACATCAAGAAGGAAACAACTGAAACAGTTGATGAACCTTCCCTTGGCATTGAGGCAACTCATGATC
CGAATCATCAAAGCTCCATAACAACTGTTCAAACTTCGATGGAAAGTGATAACTTGACAGTTGAATCCAATGAGAATAGTAAGGGTCTGGAAGAATTTGT
TGACAAGAAGGTCGAAAAGGAGGCATCCGAAACAGGAAAACTGTCGGAAGAAGCACAGCAGTTGGCGATTCCAGGGTCTTCAGAAGCAGAGGAAACTTCC
TTAGGTAAATTGGATAATGTAATTACCCAAGAGAAGGCAGAGATTCCTAAAGAATACAACAACGAAGATCTGGTGAATGAAAACAAGGCAACAGATTCCT
CCTTTGAGCCATATCCAGTTGAAGAGGTGACCTTGCAGAAAGATGAAGAGAATGTTGAACTCTCAGATACAAAGCCTGAAACTGCTGGAGAAGTTGAGAG
CAGCATTCCAAGAGAGACTGAACAGAACGATGATGCTGGAAGAGTTTCATCTGATGAACCTGAAACCATAACTGAAACTTCACAGGAGAAGACACAGAAT
GAAAGCAAAGCGGAGGTAACTGAGACCGACCAGACCACTGAGAAGGAAATATCGGAAGACAAGGAACTAGATCTGAAGAAGAGTGACGTTGAAGAGATTA
TTGAAAAGTCCTCCTTTACAGAAGCAGAGGGATTTACTGTCAGTGAAAAAACCAAAGACAGTGTTGAAGAAATTGGTGCTGAAACTGTTCTACCAGAGAA
AGACCATGAACCGGAAGCTGTACAAGAGAATCCTGAAGAGCTGCTAGTATCTGAACGAGAAATCGCGACTGAAGGTGATAAGGCAGCAGTAGTGCAGAAA
GAGGAGACTGTTCAAGCTTCCAAGGAGGCTGACGAATTAGAGGTAACGAAAGGGTTGCCAGAGCCGATAAAGCTTGCGCAGAGCGAAAACGTGGTTGAAG
CGATGTTAGGAAAGGAAGAAGATAAGGAAAGTGTAGCTGAAGAGGAATCATTACCTGAAGCAGAAGAAGGAGGAGTAAGCGTTGAAGATCTGAAACCAGA
GGCTGAAAATCAGATTGAAGAAATCGATGAGGCTAAGCAGGCCGCTAATATAACCGAAGAGGCAAGAAAAAACATAAGAATTATGTTTCCAAATTTGATT
GCATAG
AA sequence
>Lus10001135 pacid=23180524 polypeptide=Lus10001135 locus=Lus10001135.g ID=Lus10001135.BGIv1.0 annot-version=v1.0
MASSEVEQIVEPLPISEVEGVESRYLRAEVEAAVSIVKSNEIQLHHTSPQQDSAGFLEKPISEVDNFLESSSDGINKASSGEVSGQVLVGIEKMSTEAKE
SEVEDQLKEAKKLVTEEVQAPEILDKSGEAKREEEISDNGVQLENYSRHLLIRVCAAGNDDATEALDTAVSSKDRSIGIVKQEEVHDESQTTSIGETANE
TVHAESRVEKEEIPGNDVVDHVQVQQPLKEAGTLQDSQTDDPSPDPKLHISPDAEMEGLESVGPTPSPVEENNEVTKEEEPETGGIVEQGETVETPQDKL
DDSEETNEEAEDIKKETTETVDEPSLGIEATHDPNHQSSITTVQTSMESDNLTVESNENSKGLEEFVDKKVEKEASETGKLSEEAQQLAIPGSSEAEETS
LGKLDNVITQEKAEIPKEYNNEDLVNENKATDSSFEPYPVEEVTLQKDEENVELSDTKPETAGEVESSIPRETEQNDDAGRVSSDEPETITETSQEKTQN
ESKAEVTETDQTTEKEISEDKELDLKKSDVEEIIEKSSFTEAEGFTVSEKTKDSVEEIGAETVLPEKDHEPEAVQENPEELLVSEREIATEGDKAAVVQK
EETVQASKEADELEVTKGLPEPIKLAQSENVVEAMLGKEEDKESVAEEESLPEAEEGGVSVEDLKPEAENQIEEIDEAKQAANITEEARKNIRIMFPNLI
A

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10001135
[exp]
0 1
AT5G20490 XI-17, ATXIK, X... MYOSIN XI-17, MYOSIN XI K, Myo... Lus10021570
[exp]
3.9 0.8485
AT5G20490 XI-17, ATXIK, X... MYOSIN XI-17, MYOSIN XI K, Myo... Lus10017160
[exp]
4.5 0.8445
AT4G02710 Kinase interacting (KIP1-like)... Lus10042627
[exp]
6.5 0.8372
AT1G54920 unknown protein Lus10029936
[exp]
6.9 0.7701
AT1G22730 MA3 domain-containing protein ... Lus10012204
[exp]
6.9 0.8247
AT5G47820 FRA1 FRAGILE FIBER 1, P-loop contai... Lus10010047
[exp]
8.7 0.8330
AT5G12870 MYB ATMYB46 myb domain protein 46 (.1) Lus10027369
[exp]
10.7 0.8258
AT2G20010 Protein of unknown function (D... Lus10012970
[exp]
11.7 0.8335
AT2G28320 Pleckstrin homology (PH) and l... Lus10016094
[exp]
12.4 0.7999
AT3G14270 FAB1B FORMS APLOID AND BINUCLEATE CE... Lus10038129
[exp]
18.3 0.8253

Lus10001135 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.