Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022266 [exp] 1117 / 0 AT5G40450 69 / 7e-11 unknown protein
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001136 pacid=23180521 polypeptide=Lus10001136 locus=Lus10001136.g ID=Lus10001136.BGIv1.0 annot-version=v1.0 ATGACAGAGGTAGCAGAGGAGACCACAATGGAGGAAGCGAAGGTACAGGATGAGGAAATCGAGGAACCGGGTGTTAATTCGAAGGATCTAAGCACAGCTG AAGCTCAGTCCAGCCAGGAAGATGAACCTGCTCTAGGTGAAGCAGATCATGAGCAAAACAATAAGCAGCAACATTCTGATACGGTTAGTGAATCAGGAAA CCCTGACGAGGACAAGCTGGATCCTGCAGTTGTTGAGAAGGAAGTGAAAGAAAATCTAGAACTTGTAGCTGAATCTCAAGGTGTTGAGGTAGTTTCAGAA AGTGAAGCCATTCCAGAATCAGATGAACTCCATTCCCAAAAAACAGAAGAGAAAACAAGAGATGTGATAGTTTCAGAGAATGATATTCCTGAAGATACAA CAGAAGAGATTTCCCTTAAAGATGTGGAGCCTAGGGAGCTTGAAGTTGATGCCAATGAAGGAGTTTCAACGGTGGCGGTTGAAGAGGAAATTAAACAAGT ATCTGACAGCCTTGAAGTCGCAGCAGTTGATGAATCCGTGAAGGAGGAGAAATCTGAAGTTCAACATCATGCACAACCTTCTGCATTGCTTGCGGAGAAG GAGGAGCTCGAAGGTTTAACTAAAACTGAGGAAATGAATGAGTTTCTGGAAAGTGAACTACAAGCTGATAGAGAACCTCAGGTGAAGGTAGAAGTCTCTA AAGCAGAGAGTGAAACAGCTGATGTCATCGAAATCGAGAGCCCTGAAGAGGCTTTAAAGGAAGAAATGCCGGTTTCACATGAGAAGGAATGCATCCGAGA TGCTTTAGATTCCTCTTTGGAGGCAATCTCAGATCAAGCACTTCCTAAAGAAGGGGGATCAGAAGAGAAAGCATATCCTGAAATCCAACCGGGAGAGAAA ACATATCCTGAAATCCAAGAAGTTGAAAAAGAAATCCAGGATGAATTTTTTGTTTCTTCAGCAGTCACTGATGAAGAAGCCGGAGAAATTCCAGAATCAG AGCTCAATGCATCAGAAAGCAAGCCAGAAGAAGATAAACTTGACCCACCAGAAGTGGACAAGAGAGCTGACACTTCAGTACCTGAAACTACAACAGCAGT CAAAGAAGAATCAGCAGAAGATAAGCCAAAACAGGCAGAAGAGGAGCTGAATCTGAATGTCACCCAACAAGTTGAAAACGATGTACAGGAAATCGGAAAT TCTCCAGCTGAGACTGATCAAGGGACCAAAGAAATTTCTGAATCACTTACAACACCTGATACTCCTCCACCCTCCACAACAATGGAAGAAGAGCCACAAC AAGTGTCAAGAGAGTTTGAAGTCATTAAGGAAGAATCCATCAAGGAGAATGAATCAGAAGTACAACCTCCTGCAGTGATTCCACAGGAGGTGTCAAACGA AAGCTCGACTAAAACCGAGGAAATGAAAGAGGAGGTGCTGGAAACTGAAGGAGAGTCCTTCTTGATCTCTAAAGTAGAGAGTGAAGCAGCTAATGTACAA GAAAGGGAGAATCCTGAAGATGCATTGAAGCAAGAAATTGTGGCTTCAGATGATCAAGAAGCCTCAGATTCCACTTTGAAGACAATTTCAGAATCCAATG AAGAAATGCAGGAAGTTCAGTCTTTTCCTGAAGAACACATATCGGAGGATGGAGAATCATGTCCTGAAATCCAACTGGAAGGAAAGCAGCACAAAGATTC AGATGCAACCGAAAACAAGGACAAGAACAGTGCAGAAGAACCCGAGGAGTTGGAAGATACTAAAAACCAAACGGAAGGAGAATGCAAGCCAGAAGAAGGT GTGCAGGAGGTCAAAGTCTCAGAAATTGAAGAAGAAACTCAGAAAAAAGAAGTTCCGGATGAAGTTATTGTTCCATTGGCTGACATTAAGGAAGAAGTCA GTCCAATACCAGAACCAGCAGCTGAAGTGATTACAAAGGAAGAACTCGAGGACAAGCCAAACCAGGAAGAAGAAGAGGAGCTGAGTGCCAACCATGGCGA GGCGGAAGTTGCAAATGACATCCAGGAAAGTCAAAACGTACAGAAGGGAGATGCTGCAGCTGAGATTTCTGAAGAAACCGAAGAAGTTTCGGGATCACTG TCTTCCTCTGATTCTCCAACTCCCACAACAATTGAAGAAGAAACCCAGGAAAAGGAATTTCAGGATGAAGTTATTGTTCCTTCAGCTGACATTAAGGGAG AAGTCAGAGAAATCTCTGAGGAAACACCAGAAGACAAGCCAAAACATGGAAACCAAGCTCCTGCACAACTAGAAGAGTTGCCGAGTATCAACCAAGTGGA GCCCGAAGTTGCAGATGACGTACAGGAAAGTGAAATTTTACAGAAGGGAGATGCTGGAGCTGAGACTCTTGCAGAAACACCACAAGTTTCTGAATCACTG TCTGCCACTGTTTCTCCATCTCCCACAAGCAGGCAAGAAGAACAAGGTTCAAGAGATTTCCACGTCTCCGAGTTAGAGCCTCGAGTGGAGAATGAATCAG AAGTACAACCCCCTGCAGTGGTTCCGGAGAAGGAGGAGCATGAAAGCTCAACTAAAACCGAGGAAATGAGAGAGGTACTGAAAACTGGACTAGAGAGTGA AGCAGCTAATATCCAAGAAAGGGGGAATCCTGAAGATGAATTGAAGCAGGAAATTGTGGCTTCAGATTCCACTTTGAAGATAATTGCAGAATCCAATGAC GCAGCGCAAGAAGTTCAGTCTCTCAATGAAGAGCACAAATCAGAAGATGGAGAATCATATCCTGAAATCCAACAGGAAGGAACAGAAAACACGGACAAGA AGACTGCAGAAGAACCTGAGGTGTTAGAAGAATGCAAGCAAGGTGTCCAAGAGGTCAAGGTCCCAGAAGTTGAAGAAGAAACTCAGGGAAAAAAAGTTCA GGATGAAGTTATTATTCCTTTAGCTGACATTAAGGAAGAAGTCAGCCGAATTCCAGAACCAGCGGCTGAAGTAATTTCTAAGGAAACACCAGAGGACAAG CCAAAACAGGAAGAAGAAGAAGAAGAAGAGCTGAGTGTCAACCATGAGAAGGCTGAAGTTAAAAAGGAAAACCAGGAAAGTGAAAACTTACAGAATGTAG ATGCTGCAACTGAGGTTGCTGAAGAAACCCAAGAAGTTTCGGAAGAGGTGCTGAAAACTGGATTAGAGAGTGAAGCAGCTAATATTCAAGAAAGGGGGAA TTCTGAAGATGAATTGAAGCAGGAAATTGTGGCTTCAGATTCCACTTTGAAGATAATTGCAGAATCCAATGACGCAGCGCCAGAAGTTCAGTCTCTCCCT GAAGAGCACAAATCAGAAGATGGAGAATCATATCCTGAAATCCAACTGGAAGGAACAGAAAACACGGACAAGAAGACTACAGAAGAACCTGAGGTGTTAG AAGAATGCAAGCAAGAAGAAGGTGTCCAAGAGATCAAGGTCCCAGAAGTTGAAGAAGAAACTCAGGGAAAAGAAGTTCAGGATGAAGTTATTATTCCTTT AGCTGACATTAAGGAAGAATTCAGCCGAATTCCAGAACCAGCAGCTGAAGTAATTTCTAAGGAAACACCAGAGGACAAGCCGAAACAGGAAGAAGAAGAA GAAGAAGAAGAAGAAGAAGAAGAGCTGAGTGTCAACCATGAGGAGGCTGAAGTTAAAAAGGAAAACCAGGAAAGTGAAAACTTACAGAAGGTAGATGCTG CAACTGACGTTGCTGAAGAAACCCAAGAAGTTTCGGCATCAGTGTCTACCTCTGTTTCTCCAGCTCCCACAACCATTGAAGAAGAAACCCGCAAAAACGA AGTTCAGGATGAAGTTATTGTTCCTGAGGAGGAAGTCAGAGAATTTTCTGAGGAAGCACCAGAAGACAAGACAAAGCAGGCAAGAGAAGAGGTGCTGAGT ATAAAGCAAGTGGAGCCTGAAGTTGCAAATGATGTCGTAGAGAAAAGTGAAAACTTACAGAAGGGAGATGCTGCAGCTGAGACTGTTGAAGAAACCCCAC AAGTTTTCGAATCACTGTCTACCACTGTTTCTCCATCCCCCACAAGCAGGAAAGAAGAACAAGGTTCAAGAGAATTCCACGCCTCCCAGTTAGAGCCTCG AGTTGAGAAGGACACATTTGAGAGCAATGAAGCCAACCAGACAGATTCCCAAGTCTCTGAAGAAATCAAAGAAGTCTGTGAAGTAGTAACCAAGTCTGAT TCCCAGGAAACTGAAGGCCTTGTAGAACATGAACTTATTGAGAAACCAGAAGGGAAGTCTCATCAGACACCCGAGATCAAGCCTGAAGATTCAGAAACAA GCGAGTCAGTACTAGTCAAAGAACTGGAACTGGAGCCAAAAATAAGTGATGAGGAATCTTTGATAAGGAAAGAGCCCACAGTTGAATCAGGCCTTGCAAA AGAAGTACAAAAGGAGAATGATGCTTCAGAGTTTGAGTTTCAAGGCTTTAAAGTAGAAAAAGAAGATACAGATGATTCTTATCATCCTTTACCAGAGGAA AAACCAGAACAAGGAGCACATGTTCCTCCAGCAGTACAGCCGGAAGAACACAAAGAAGCTGCGAAATCATTTAAAAAAAACTCCGATATCACCACTGAAA CAGCAAATGAGACTTCAGAGTCTGCATTAGAAGTTAGTCTCCACCAGGAAGTCGTCCCTAAACCAGAAGATACGGTAGTCAATGAAACTCAACAAGAGAA GTACTCCACAGCTGAGCAGCCAAACCTGAAAGCCAATCCTGATGAAGCAAGCCAGCCGATTGAGGACGAGATGACAACTGACATCCTTGGAGAACCGTTG GTTGAGAAGGATATCATCAGCAAGGAAATCAATATTCCAAGTGAAGAACATGGAAAACTTGTTGAGGAAGAAACAAAATTGAATACTGAAGCAACCAATG CAGCAGAAACCACAACTGTGATTGATAAGCAGTCCACAAGGGTAACTCAATTGGATCCAGAATCGGCACCAGAGGATAAAGAACAAAAGGTAATAACAAC AGGAGATGAGACCAAAGCAGAAGCAGAGAAAGCAAAGTCAGACGAAGAGAAAGAAGAAGACGATGAAAATGAAGAACAGCATAAAAATGATTCAGGGTCT GATGGACTAGTGATTGTAGAAGCAGTCAGCAAGGAGACAGAAACAGCAGTAAAGGTGGTTTCTCCGAAGAAGAAATCCCACAACATACTATCAGAAGTTG GGTCAAAGGTGAAGCATTCGATTTCGAAAGTGAAGAAAGTCATTACTGGGAAGTCCAGTTCTTCTAATCATACTAAGCAGAACTCAAGCTAA
AA sequence Show only first row Show all	>Lus10001136 pacid=23180521 polypeptide=Lus10001136 locus=Lus10001136.g ID=Lus10001136.BGIv1.0 annot-version=v1.0 MTEVAEETTMEEAKVQDEEIEEPGVNSKDLSTAEAQSSQEDEPALGEADHEQNNKQQHSDTVSESGNPDEDKLDPAVVEKEVKENLELVAESQGVEVVSE SEAIPESDELHSQKTEEKTRDVIVSENDIPEDTTEEISLKDVEPRELEVDANEGVSTVAVEEEIKQVSDSLEVAAVDESVKEEKSEVQHHAQPSALLAEK EELEGLTKTEEMNEFLESELQADREPQVKVEVSKAESETADVIEIESPEEALKEEMPVSHEKECIRDALDSSLEAISDQALPKEGGSEEKAYPEIQPGEK TYPEIQEVEKEIQDEFFVSSAVTDEEAGEIPESELNASESKPEEDKLDPPEVDKRADTSVPETTTAVKEESAEDKPKQAEEELNLNVTQQVENDVQEIGN SPAETDQGTKEISESLTTPDTPPPSTTMEEEPQQVSREFEVIKEESIKENESEVQPPAVIPQEVSNESSTKTEEMKEEVLETEGESFLISKVESEAANVQ ERENPEDALKQEIVASDDQEASDSTLKTISESNEEMQEVQSFPEEHISEDGESCPEIQLEGKQHKDSDATENKDKNSAEEPEELEDTKNQTEGECKPEEG VQEVKVSEIEEETQKKEVPDEVIVPLADIKEEVSPIPEPAAEVITKEELEDKPNQEEEEELSANHGEAEVANDIQESQNVQKGDAAAEISEETEEVSGSL SSSDSPTPTTIEEETQEKEFQDEVIVPSADIKGEVREISEETPEDKPKHGNQAPAQLEELPSINQVEPEVADDVQESEILQKGDAGAETLAETPQVSESL SATVSPSPTSRQEEQGSRDFHVSELEPRVENESEVQPPAVVPEKEEHESSTKTEEMREVLKTGLESEAANIQERGNPEDELKQEIVASDSTLKIIAESND AAQEVQSLNEEHKSEDGESYPEIQQEGTENTDKKTAEEPEVLEECKQGVQEVKVPEVEEETQGKKVQDEVIIPLADIKEEVSRIPEPAAEVISKETPEDK PKQEEEEEEELSVNHEKAEVKKENQESENLQNVDAATEVAEETQEVSEEVLKTGLESEAANIQERGNSEDELKQEIVASDSTLKIIAESNDAAPEVQSLP EEHKSEDGESYPEIQLEGTENTDKKTTEEPEVLEECKQEEGVQEIKVPEVEEETQGKEVQDEVIIPLADIKEEFSRIPEPAAEVISKETPEDKPKQEEEE EEEEEEEELSVNHEEAEVKKENQESENLQKVDAATDVAEETQEVSASVSTSVSPAPTTIEEETRKNEVQDEVIVPEEEVREFSEEAPEDKTKQAREEVLS IKQVEPEVANDVVEKSENLQKGDAAAETVEETPQVFESLSTTVSPSPTSRKEEQGSREFHASQLEPRVEKDTFESNEANQTDSQVSEEIKEVCEVVTKSD SQETEGLVEHELIEKPEGKSHQTPEIKPEDSETSESVLVKELELEPKISDEESLIRKEPTVESGLAKEVQKENDASEFEFQGFKVEKEDTDDSYHPLPEE KPEQGAHVPPAVQPEEHKEAAKSFKKNSDITTETANETSESALEVSLHQEVVPKPEDTVVNETQQEKYSTAEQPNLKANPDEASQPIEDEMTTDILGEPL VEKDIISKEINIPSEEHGKLVEEETKLNTEATNAAETTTVIDKQSTRVTQLDPESAPEDKEQKVITTGDETKAEAEKAKSDEEKEEDDENEEQHKNDSGS DGLVIVEAVSKETETAVKVVSPKKKSHNILSEVGSKVKHSISKVKKVITGKSSSSNHTKQNSS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G40450			unknown protein		Lus10001136 [exp]	0	1
AT3G23590		MED33A, RFR1	REF4-related 1 (.1)		Lus10034021 [exp]	4.0	0.8155
AT5G49830		EXO84B	exocyst complex component 84B ...		Lus10035756 [exp]	5.0	0.7664
AT4G21760		BGLU47	beta-glucosidase 47 (.1)		Lus10032660 [exp]	5.5	0.7879
AT1G08800			Protein of unknown function, D...		Lus10006566 [exp]	7.9	0.7458
AT3G08860		PYD4	PYRIMIDINE 4 (.1)		Lus10009086 [exp]	9.3	0.7885
AT1G62760			Plant invertase/pectin methyle...		Lus10032232 [exp]	16.0	0.6798
AT2G30910		ARPC1B, ARPC1, ...	actin-related protein C1A (.1....		Lus10031375 [exp]	18.0	0.7468
AT3G09920		PIP5K9	phosphatidyl inositol monophos...		Lus10023909 [exp]	27.5	0.7390
AT5G18980			ARM repeat superfamily protein...		Lus10001111 [exp]	31.9	0.7424
AT1G02120		VAD1	VASCULAR ASSOCIATED DEATH1, GR...		Lus10028209 [exp]	32.5	0.7223

Compare expression of checked genes

Lus10001136 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.