Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40440 711 / 0 ATMKK3 mitogen-activated protein kinase kinase 3 (.1) AT5G56580 244 / 2e-77 ANQ1, ATMKK6 ARABIDOPSIS THALIANA MAP KINASE KINASE 6, ARABIDOPSIS NQK1, MAP kinase kinase 6 (.1) AT4G29810 241 / 5e-76 MK1, ATMKK2 MAP KINASE KINASE 1, MAP kinase kinase 2 (.1.2.3) AT4G26070 218 / 4e-67 NMAPKK, MKK1, ATMEK1, MEK1 MITOGEN ACTIVATED PROTEIN KINASE KINASE 1, MAP kinase/ ERK kinase 1 (.1.2.3) AT1G73500 165 / 2e-47 ATMKK9 MAP kinase kinase 9 (.1) AT1G18350 160 / 8e-46 ATMKK7, BUD1 MAP KINASE KINASE7, BUSHY AND DWARF 1, MAP kinase kinase 7 (.1) AT1G51660 157 / 5e-44 ATMKK4, ATMEK4 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 4, mitogen-activated protein kinase kinase 4 (.1) AT3G21220 154 / 6e-43 ATMAP2K_ALPHA, ATMKK5, ATMEK5 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5, MAP kinase kinase 5 (.1) AT3G15220 144 / 2e-37 Protein kinase superfamily protein (.1) AT1G53165 143 / 7e-37 ATMAP4KALPHA1 ,ATMAP4K ALPHA1 Protein kinase superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022265 [exp] 863 / 0 AT5G40440 861 / 0.0 mitogen-activated protein kinase kinase 3 (.1) Lus10027623 [exp] 238 / 1e-74 AT4G29810 520 / 0.0 MAP KINASE KINASE 1, MAP kinase kinase 2 (.1.2.3) Lus10011945 [exp] 239 / 5e-74 AT4G29810 407 / 4e-140 MAP KINASE KINASE 1, MAP kinase kinase 2 (.1.2.3) Lus10012938 [exp] 222 / 9e-69 AT5G56580 621 / 0.0 ARABIDOPSIS THALIANA MAP KINASE KINASE 6, ARABIDOPSIS NQK1, MAP kinase kinase 6 (.1) Lus10034986 [exp] 211 / 4e-64 AT5G56580 605 / 0.0 ARABIDOPSIS THALIANA MAP KINASE KINASE 6, ARABIDOPSIS NQK1, MAP kinase kinase 6 (.1) Lus10001081 [exp] 147 / 9e-42 AT1G73500 296 / 2e-101 MAP kinase kinase 9 (.1) Lus10035764 [exp] 145 / 1e-39 AT1G51660 500 / 7e-179 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 4, mitogen-activated protein kinase kinase 4 (.1) Lus10002096 [exp] 135 / 4e-34 AT2G13680 1077 / 0.0 ARABIDOPSIS THALIANA GLUCAN SYNTHASE-LIKE 2, callose synthase 5 (.1) Lus10042750 [exp] 127 / 4e-33 AT4G08500 380 / 8e-129 MAPK/ERK kinase kinase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G345500 [exp] 781 / 0 AT5G40440 851 / 0.0 mitogen-activated protein kinase kinase 3 (.1) Potri.006G146500 [exp] 247 / 3e-78 AT4G29810 495 / 7e-177 MAP KINASE KINASE 1, MAP kinase kinase 2 (.1.2.3) Potri.018G068500 [exp] 244 / 2e-77 AT5G56580 588 / 0.0 ARABIDOPSIS THALIANA MAP KINASE KINASE 6, ARABIDOPSIS NQK1, MAP kinase kinase 6 (.1) Potri.018G050800 [exp] 244 / 3e-77 AT4G29810 540 / 0.0 MAP KINASE KINASE 1, MAP kinase kinase 2 (.1.2.3) Potri.015G030700 [exp] 161 / 9e-46 AT1G73500 392 / 9e-138 MAP kinase kinase 9 (.1) Potri.010G249300 [exp] 154 / 1e-42 AT3G21220 474 / 1e-168 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5, MAP kinase kinase 5 (.1) Potri.008G009800 [exp] 150 / 2e-41 AT3G21220 474 / 9e-169 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5, MAP kinase kinase 5 (.1) Potri.012G043200 [exp] 147 / 8e-41 AT1G73500 381 / 2e-133 MAP kinase kinase 9 (.1) Potri.008G183700 [exp] 147 / 2e-40 AT1G18350 289 / 5e-97 MAP KINASE KINASE7, BUSHY AND DWARF 1, MAP kinase kinase 7 (.1) Potri.011G116300 [exp] 145 / 1e-37 AT3G15220 817 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10001137 pacid=23180523 polypeptide=Lus10001137 locus=Lus10001137.g ID=Lus10001137.BGIv1.0 annot-version=v1.0 ATGAAGAATTATACTGAAAGAATTGGTGCAAGCAGTGTTGTTCAGAGAGCTATCCATATTCCAACTCATAAAATTCTTGCTTTGAAGAAAATTAACATTT TCGAGAAGGAGAAGAGACAACAGCTTCTGACAGAGATACGGACGCTATGTGAGGCACCATGCTACGAGGGGCTTGTCGAATTCCATGGAGCCTTTTACAC TCCTGTTTCTGGCCAAATAAGCATAGCTTTGGAATATATGGATGGTGGATCACTGGCAGATATCTTGCGATTGCGGAAAACCATTCCAGAACCAGTGCTT TCATTTATGTTTCAAAAGCTTCTGCATGGACTAAGTTACTTGCATGGAGTCAGACATTTAGTCCACAGAGACATCAAACCAGCAAATATGCTTGTAAATC TCAAGGGCGAGCCAAAAATAACAGACTTCGGAATAAGTGCCGGTCTAGAGAATTCAGTCGCAATGTGTGCAACTTTTGTTGGAACAGTTACATATATGTC ACCTGAGAGAATTCGAAATGAGAGCTACTCATATCCAGCGGATATTTGGAGCCTTGGCCTCGCTCTTTTTGAGTGTGGTACGGGGGAGTTCCCTTACACT GCTAATGAAGGACCAGTCAATCTTATGTTGCAGATTTTGGACGATCCATCTCCTTCACCACCCAAGGATACATTTTCACCCGAGTTCTGCTCATTTATTG ATGTGTGCTTACGTAAGGATCCAGATGCAAGGCCTACTGTAGAAGAGCTCCTTGTTCACCCATTCATTATGAAGTACGCTCACACTGCAGTAGACTTGGC TGCATTTGTTCGAGGTGTTTTTGATCCAACTCAGAAAATGAAGGATTTGGCAGATATGCTGACAATGCACTACTACCTTCTTTTCGATGGACCGGACGAG TTTTGGTTTCACGCAAAGAAATTGTACAGCGAAGGGTCAACATTTAGTTTCTCAGGGAATCAATCGGTTGGTTCAAGGGACATCTTCAAGACCTTGTCAA ACATCAGGGCGACATTGGCAGGTGACTGGCCTCCTCAGAAGCTTGTTCACGTCGTCGAAAAGCTACAGTGTCGTACTGTTGGGCAGGATGGTGTGGCAAT AAGAGTATCAGGGTCTTTCATAATCGGAAATCAGTTCCTTATTTGCGGGGATGGCATACAAGTTGAGGGACTGCCGAATTTTAAGGATCTGTCAATTGAT CTAGCCACCAAGCGAATGGGTACTTTCCAGGAGCAGTTTATCATGCAACCAGGATCTGCCATCGGGTGCTACTTTATAGCTAAGCAAGAGCTTTACATCA TGCAATAG
AA sequence Show only first row Show all	>Lus10001137 pacid=23180523 polypeptide=Lus10001137 locus=Lus10001137.g ID=Lus10001137.BGIv1.0 annot-version=v1.0 MKNYTERIGASSVVQRAIHIPTHKILALKKINIFEKEKRQQLLTEIRTLCEAPCYEGLVEFHGAFYTPVSGQISIALEYMDGGSLADILRLRKTIPEPVL SFMFQKLLHGLSYLHGVRHLVHRDIKPANMLVNLKGEPKITDFGISAGLENSVAMCATFVGTVTYMSPERIRNESYSYPADIWSLGLALFECGTGEFPYT ANEGPVNLMLQILDDPSPSPPKDTFSPEFCSFIDVCLRKDPDARPTVEELLVHPFIMKYAHTAVDLAAFVRGVFDPTQKMKDLADMLTMHYYLLFDGPDE FWFHAKKLYSEGSTFSFSGNQSVGSRDIFKTLSNIRATLAGDWPPQKLVHVVEKLQCRTVGQDGVAIRVSGSFIIGNQFLICGDGIQVEGLPNFKDLSID LATKRMGTFQEQFIMQPGSAIGCYFIAKQELYIMQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G40440		ATMKK3	mitogen-activated protein kina...		Lus10001137 [exp]	0	1
AT4G36860		DAR1	DA1-RELATED PROTEIN 1, LIM dom...		Lus10022486 [exp]	4.0	0.8544
AT1G77000		ATSKP2;2, SKP2B	ARABIDOPSIS HOMOLOG OF HOMOLOG...		Lus10000776 [exp]	4.9	0.8518
AT5G40870		UKL1, ATUK/UPRT...	URIDINE KINASE-LIKE 1, uridine...		Lus10041569 [exp]	5.3	0.8391
AT3G14205			Phosphoinositide phosphatase f...		Lus10013184 [exp]	5.5	0.8553
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10039479 [exp]	6.0	0.8408
AT1G02070			unknown protein		Lus10015899 [exp]	10.0	0.8340
AT5G01450			RING/U-box superfamily protein...		Lus10002487 [exp]	11.2	0.8479
AT4G35360			Uncharacterised conserved prot...		Lus10013846 [exp]	12.2	0.8068
AT1G21650		SECA2	Preprotein translocase SecA fa...		Lus10028560 [exp]	16.2	0.8342
AT3G09850			D111/G-patch domain-containing...		Lus10036327 [exp]	17.5	0.8207

Compare expression of checked genes

Lus10001137 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.