Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63090 98 / 2e-26 AS2 LOBB, LOB Lateral organ boundaries (LOB) domain family protein (.1), Lateral organ boundaries (LOB) domain family protein (.2), Lateral organ boundaries (LOB) domain family protein (.3), Lateral organ boundaries (LOB) domain family protein (.4) AT3G27650 93 / 2e-24 AS2 LBD25 LOB domain-containing protein 25 (.1) AT1G65620 92 / 1e-23 AS2 AS2 ASYMMETRIC LEAVES 2, Lateral organ boundaries (LOB) domain family protein (.1), Lateral organ boundaries (LOB) domain family protein (.2), Lateral organ boundaries (LOB) domain family protein (.3), Lateral organ boundaries (LOB) domain family protein (.4) AT2G30130 87 / 5e-22 AS2 PCK1, LBD12, ASL5 PEACOCK 1, Lateral organ boundaries (LOB) domain family protein (.1) AT1G31320 84 / 8e-21 AS2 LBD4 LOB domain-containing protein 4 (.1) AT5G66870 86 / 9e-21 AS2 LBD36, ASL1 LATERAL ORGAN BOUNDARIES DOMAIN GENE 36, ASYMMETRIC LEAVES 2-like 1 (.1) AT2G40470 81 / 2e-19 AS2 ASL11, LBD15 ASYMMETRIC LEAVES2-LIKE 11, LOB domain-containing protein 15 (.1) AT2G30340 81 / 4e-19 AS2 LBD13 LOB domain-containing protein 13 (.1) AT1G16530 79 / 7e-19 AS2 ASL9, LBD3 LOB DOMAIN-CONTAINING PROTEIN 3, ASYMMETRIC LEAVES 2-like 9 (.1) AT2G23660 79 / 3e-18 AS2 LBD10 LOB domain-containing protein 10 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040638 [exp] 89 / 1e-22 AT1G31320 244 / 1e-83 LOB domain-containing protein 4 (.1) Lus10018275 [exp] 88 / 2e-22 AT1G31320 243 / 2e-83 LOB domain-containing protein 4 (.1) Lus10009336 [exp] 89 / 3e-22 AT5G66870 170 / 6e-52 LATERAL ORGAN BOUNDARIES DOMAIN GENE 36, ASYMMETRIC LEAVES 2-like 1 (.1) Lus10031191 [exp] 87 / 4e-22 AT1G31320 199 / 2e-66 LOB domain-containing protein 4 (.1) Lus10031769 [exp] 86 / 8e-22 AT1G31320 193 / 8e-64 LOB domain-containing protein 4 (.1) Lus10013610 [exp] 89 / 9e-22 AT1G65620 208 / 1e-67 ASYMMETRIC LEAVES 2, Lateral organ boundaries (LOB) domain family protein (.1), Lateral organ boundaries (LOB) domain family protein (.2), Lateral organ boundaries (LOB) domain family protein (.3), Lateral organ boundaries (LOB) domain family protein (.4) Lus10016769 [exp] 88 / 1e-21 AT5G66870 222 / 3e-71 LATERAL ORGAN BOUNDARIES DOMAIN GENE 36, ASYMMETRIC LEAVES 2-like 1 (.1) Lus10017431 [exp] 85 / 2e-21 AT2G30130 199 / 1e-65 PEACOCK 1, Lateral organ boundaries (LOB) domain family protein (.1) Lus10022463 [exp] 87 / 3e-21 AT5G66870 221 / 8e-71 LATERAL ORGAN BOUNDARIES DOMAIN GENE 36, ASYMMETRIC LEAVES 2-like 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G345700 [exp] 100 / 3e-27 AT3G27650 208 / 5e-70 LOB domain-containing protein 25 (.1) Potri.012G083500 [exp] 96 / 3e-25 AT5G63090 223 / 4e-75 Lateral organ boundaries (LOB) domain family protein (.1), Lateral organ boundaries (LOB) domain family protein (.2), Lateral organ boundaries (LOB) domain family protein (.3), Lateral organ boundaries (LOB) domain family protein (.4) Potri.015G082200 [exp] 96 / 4e-25 AT5G63090 223 / 4e-75 Lateral organ boundaries (LOB) domain family protein (.1), Lateral organ boundaries (LOB) domain family protein (.2), Lateral organ boundaries (LOB) domain family protein (.3), Lateral organ boundaries (LOB) domain family protein (.4) Potri.008G079800 [exp] 92 / 2e-23 AT1G65620 263 / 7e-90 ASYMMETRIC LEAVES 2, Lateral organ boundaries (LOB) domain family protein (.1), Lateral organ boundaries (LOB) domain family protein (.2), Lateral organ boundaries (LOB) domain family protein (.3), Lateral organ boundaries (LOB) domain family protein (.4) Potri.010G177100 [exp] 92 / 2e-23 AT1G65620 288 / 5e-100 ASYMMETRIC LEAVES 2, Lateral organ boundaries (LOB) domain family protein (.1), Lateral organ boundaries (LOB) domain family protein (.2), Lateral organ boundaries (LOB) domain family protein (.3), Lateral organ boundaries (LOB) domain family protein (.4) Potri.001G081400 [exp] 87 / 3e-22 AT1G31320 228 / 3e-77 LOB domain-containing protein 4 (.1) Potri.003G149000 [exp] 87 / 7e-22 AT1G31320 241 / 2e-82 LOB domain-containing protein 4 (.1) Potri.007G039500 [exp] 88 / 1e-21 AT5G66870 256 / 1e-84 LATERAL ORGAN BOUNDARIES DOMAIN GENE 36, ASYMMETRIC LEAVES 2-like 1 (.1) Potri.005G134900 [exp] 88 / 1e-21 AT5G66870 254 / 8e-84 LATERAL ORGAN BOUNDARIES DOMAIN GENE 36, ASYMMETRIC LEAVES 2-like 1 (.1) Potri.005G097800 [exp] 85 / 1e-21 AT1G31320 193 / 6e-64 LOB domain-containing protein 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03195 [flax] [poplar] LOB Lateral organ boundaries (LOB) domain
Representative CDS sequence Show only first row Show all	>Lus10001139 pacid=23180519 polypeptide=Lus10001139 locus=Lus10001139.g ID=Lus10001139.BGIv1.0 annot-version=v1.0 ATGGCAGGAAATTCGTCGTCGTCATCATCCACAACAAGCAATAACTACACAAACTCGCCGTGCGCGGCGTGCAAGTTCCTGAGGAGGAAATGCCTGCCGG ACTGCATCTTCGCGCCCTACTTCCCTCCAGAGGAGCCCCACAAGTTTGCAAACGTCCACAAGATTTTCGGGGCAAGCAACGTCAGCAAGCTGCTCATTCA GGGCAAGCAACGTCAGCAAGCTGCTCAACGAGGTCCTCCCGCATCAGAGGGAGGACGCAGTCAACTCGCTGGCTTACGAGGCCGAGGCGAGGCTCAAGGA CCCGGTCTACGGCTGCGTTGGAGCTATCTCAGTCCTCGAGAGACAGAAGCATCGAGAATGAACCCCATTTATGATCATCATCAGCAGGGCTACTATGGTA ATTACAGCTCATGGAACAACAATAATTGTGGTGGAGATCATGGCCAGGGAAGAGGAAGTGGAGGAGGAGGTTTCTAA
AA sequence Show only first row Show all	>Lus10001139 pacid=23180519 polypeptide=Lus10001139 locus=Lus10001139.g ID=Lus10001139.BGIv1.0 annot-version=v1.0 MAGNSSSSSSTTSNNYTNSPCAACKFLRRKCLPDCIFAPYFPPEEPHKFANVHKIFGASNVSKLLIQGKQRQQAAQRGPPASEGGRSQLAGLRGRGEAQG PGLRLRWSYLSPRETEASRMNPIYDHHQQGYYGNYSSWNNNNCGGDHGQGRGSGGGGF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G63090	AS2	LOBB, LOB	Lateral organ boundaries (LOB)...		Lus10001139 [exp]	0	1
AT2G45430	AT-hook	AHL22	AT-hook motif nuclear-localize...		Lus10007007 [exp]	2.6	0.9590
AT1G76370			Protein kinase superfamily pro...		Lus10007041 [exp]	5.1	0.9474
AT4G25320	AT-hook		AT hook motif DNA-binding fami...		Lus10031118 [exp]	8.7	0.9551
AT2G01830		CRE1, AHK4, WOL...	WOODEN LEG 1, WOODEN LEG, CYTO...		Lus10028992 [exp]	8.8	0.9559
AT3G01516			unknown protein		Lus10014544 [exp]	10.0	0.9502
AT3G01516			unknown protein		Lus10032143 [exp]	10.7	0.9418
					Lus10024615 [exp]	12.6	0.9544
AT5G57090		MM31, ATPIN2, A...	WAVY ROOTS 6, ETHYLENE INSENSI...		Lus10001429 [exp]	12.7	0.9559
AT3G15850		JB67, FADB, ADS...	FATTY ACID DESATURASE B, fatty...		Lus10041042 [exp]	12.7	0.9511
AT3G19990			unknown protein		Lus10028681 [exp]	14.3	0.9539

Compare expression of checked genes

Lus10001139 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.