Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52890 102 / 1e-23 AT hook motif-containing protein (.1.2) AT4G21895 87 / 3e-19 DNA binding (.1) AT5G54930 70 / 3e-13 AT hook motif-containing protein (.1.2) AT3G13350 45 / 7e-05 ARID HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002064 [exp] 756 / 0 AT5G52890 114 / 4e-28 AT hook motif-containing protein (.1.2) Lus10040754 [exp] 81 / 1e-16 AT5G54930 132 / 1e-36 AT hook motif-containing protein (.1.2) Lus10016478 [exp] 81 / 1e-16 AT5G54930 125 / 5e-34 AT hook motif-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G017000 [exp] 169 / 4e-47 AT4G21895 96 / 2e-22 DNA binding (.1) Potri.011G001901 [exp] 168 / 4e-47 AT4G21895 74 / 5e-15 DNA binding (.1) Potri.011G138700 [exp] 83 / 6e-17 AT5G54930 93 / 5e-21 AT hook motif-containing protein (.1.2) Potri.001G422966 [exp] 82 / 6e-17 AT5G54930 102 / 4e-25 AT hook motif-containing protein (.1.2) Potri.011G168800 [exp] 44 / 0.0002 AT3G13350 307 / 3e-104 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001140 pacid=23156345 polypeptide=Lus10001140 locus=Lus10001140.g ID=Lus10001140.BGIv1.0 annot-version=v1.0 ATGAACCCACAGAATCAAGGGTCTGGATCTTCTACGCCTCTAGATCCCCCTCAGAGGCGCAAGCGAGGTCGTCCACGAAAGGACGAGCACCTGCTCCCAG GAGAAAACATGTTCTCTGTTCCTGTGCCCGACAATATGCTGAGAAACACTCAGACTTTCGGTTTGGCGGTTGCTGGCAGCAGTAGTGAGCCGTCCGGTCC GATGGTTGGGGTTAACATGATCGGCCAGGCGGTTTCTGGGGTTGTTGATGGAAAATTCGATGCCGGATATCTTCTAAAAGTTAAAGTAGGAGATAGCGAA AATTATTTGAGAGGGGTCGTATTCTTGCCAAATCGCATCGTTCCAGTTACTGCTGCTAATGATCTGGCTCCACAAGCGAAAATGTATACCAGAGCAGATG TCCCGATCCCGGTCCTCAACCCGCCACAGTTTCAGGTTTCTGTTCCTCCACCAGAGCAAAGTGAAAAGCAATCTGCTGAACCTAAAGTTTTTAAACCTGT TGAAGGCCAAGGAATGTCATCTGATCATCAACCAAGCCCTGGAACCGGTAAAGAGAATCAATTTGCTTCGGTAACACTACCTCTCACTGATAATTTCCGA GCAGTGAATGTCATGTCACGGCAAATCTTGGATTCAGGATCCGGTAGCCGTTCTCCAGCCAACTTAGCACCAACGGGGAGTGCCACAGCTGCCAGGCAAG ATGATTTACTATTAGAGTTTGATGCCTCCATGAAAAAAGTGGAGGCAGCTTCAAAACTGTCAAGTTCAACTGTCAATCTTGAGCTTCAAATTCAACACCC GCCTAACGAATTCGATGCCAGCCAGTCGGTTCTGGAAGGAGGGAAGACTTCAAGCCCGGAGCGCGTCCAACCTCATGTGATCGGAGAACCTGGAAGTGAA ATCATCTCCTCGGAATCAGCAGATGGTATGAGTATTTCCTTGGGTAACCCAACTCCTCTGGCGAAAGCTGCACCACCGGAGCCTGCTACAGATGTTACCG TCACAGATGCTCCATCTGGGGACCTAAATGGTGGCCTTGTAGGTCATGCTGCAGAAATTCCCCAGGCGGACACAAATTGTCCATCAACAGCTGCTGTGGT GATGGAGAAAGAAGCTATTTACTCTGTGCCAAAGTCCGATTCTGAGGGATCATCATCTCTTCAGAAAATACTGGAATCCCAGTTCGGCTGTTCTTCTGAT GGCATGGACCCGATGAAAATGGACCCTCCAATGGCAAACAGCTCTCCAATGGAGTTGTTCGAGAATCCGGCCGAACCAAAGTTTGTAAATGATGGAGGTT TCGTGGCTTGTGTGAGTATTGAACCCCCCCAGATGTGCAAAGATGACATGCCCCCTGCAGAATCTTGA
AA sequence Show only first row Show all	>Lus10001140 pacid=23156345 polypeptide=Lus10001140 locus=Lus10001140.g ID=Lus10001140.BGIv1.0 annot-version=v1.0 MNPQNQGSGSSTPLDPPQRRKRGRPRKDEHLLPGENMFSVPVPDNMLRNTQTFGLAVAGSSSEPSGPMVGVNMIGQAVSGVVDGKFDAGYLLKVKVGDSE NYLRGVVFLPNRIVPVTAANDLAPQAKMYTRADVPIPVLNPPQFQVSVPPPEQSEKQSAEPKVFKPVEGQGMSSDHQPSPGTGKENQFASVTLPLTDNFR AVNVMSRQILDSGSGSRSPANLAPTGSATAARQDDLLLEFDASMKKVEAASKLSSSTVNLELQIQHPPNEFDASQSVLEGGKTSSPERVQPHVIGEPGSE IISSESADGMSISLGNPTPLAKAAPPEPATDVTVTDAPSGDLNGGLVGHAAEIPQADTNCPSTAAVVMEKEAIYSVPKSDSEGSSSLQKILESQFGCSSD GMDPMKMDPPMANSSPMELFENPAEPKFVNDGGFVACVSIEPPQMCKDDMPPAES

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52890			AT hook motif-containing prote...		Lus10001140 [exp]	0	1
AT4G21430		B160	Zinc finger, RING-type;Transcr...		Lus10020084 [exp]	2.4	0.9282
AT1G75640			Leucine-rich receptor-like pro...		Lus10033924 [exp]	4.2	0.9288
AT5G58930			Protein of unknown function (D...		Lus10018206 [exp]	5.3	0.9265
AT2G01630			O-Glycosyl hydrolases family 1...		Lus10007929 [exp]	5.7	0.8983
AT5G25380		CYCA2;1	cyclin a2;1 (.1)		Lus10013140 [exp]	5.8	0.9364
AT1G16610		RNPS1, SR45	arginine/serine-rich 45 (.1.2....		Lus10031786 [exp]	7.7	0.9137
AT1G13030			sphere organelles protein-rela...		Lus10036876 [exp]	9.8	0.9161
AT2G23530			Zinc-finger domain of monoamin...		Lus10019647 [exp]	10.6	0.9204
AT4G20940			Leucine-rich receptor-like pro...		Lus10038544 [exp]	10.7	0.9244
AT1G13030			sphere organelles protein-rela...		Lus10006228 [exp]	12.3	0.8942

Compare expression of checked genes

Lus10001140 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.