Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11655 44 / 2e-06 unknown protein AT4G04745 44 / 2e-06 unknown protein AT4G21902 38 / 0.0002 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002065 [exp] 192 / 2e-64 AT1G11655 64 / 4e-14 unknown protein Lus10020050 [exp] 78 / 1e-19 AT1G11655 68 / 5e-16 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G002100 [exp] 66 / 8e-15 AT4G04745 58 / 1e-11 unknown protein Potri.004G016800 [exp] 64 / 2e-14 AT4G04745 56 / 6e-11 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001141 pacid=23156347 polypeptide=Lus10001141 locus=Lus10001141.g ID=Lus10001141.BGIv1.0 annot-version=v1.0 ATGAGCATTGGCCAGAGAATGAATATATCTAACAGCGGTTACTCGAAGCTGGACAAGGAAGACCCAGAAGATGTCAACCACAGAAGGGCTCAGTTTCTCA TCTACAAAGTAATGGTAATGCAGCAAGTTGACAAACAGTACTCACAGAGGAGGAAGATTCATCCGCTCGTCTCTACGTCGTTTATCAGGATCAGACTCTG CCGCCTCAAGATCAAGATCGGCAAGAAGCTCAGGAAAAGTGTGCTGGCGAGTGCCAGATTAAGGATCTATAGGCAACTCAAGATTCAGTGGAAGCGCTTG TTTAGACGGCCGGCCGGTGAGACCATCGCCGGCGCCGCCGTTGGTCTTCCTGCTTCGATTTTCCCTTCCCTGTAA
AA sequence Show only first row Show all	>Lus10001141 pacid=23156347 polypeptide=Lus10001141 locus=Lus10001141.g ID=Lus10001141.BGIv1.0 annot-version=v1.0 MSIGQRMNISNSGYSKLDKEDPEDVNHRRAQFLIYKVMVMQQVDKQYSQRRKIHPLVSTSFIRIRLCRLKIKIGKKLRKSVLASARLRIYRQLKIQWKRL FRRPAGETIAGAAVGLPASIFPSL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11655			unknown protein		Lus10001141 [exp]	0	1
AT5G19440			NAD(P)-binding Rossmann-fold s...		Lus10016388 [exp]	3.3	0.9319
AT4G20140		GSO1	GASSHO1, Leucine-rich repeat t...		Lus10038392 [exp]	4.2	0.8951
AT3G03773			HSP20-like chaperones superfam...		Lus10002623 [exp]	5.9	0.8995
AT5G08170		ATAIH, EMB1873	EMBRYO DEFECTIVE 1873, AGMATIN...		Lus10042920 [exp]	6.9	0.8903
AT3G01980			NAD(P)-binding Rossmann-fold s...		Lus10012548 [exp]	8.8	0.9157
AT1G28340		AtRLP4	receptor like protein 4 (.1)		Lus10013994 [exp]	8.8	0.9113
AT4G23740			Leucine-rich repeat protein ki...		Lus10038828 [exp]	9.2	0.8848
AT5G42180		PER64	peroxidase 64, Peroxidase supe...		Lus10034547 [exp]	10.2	0.9105
AT3G26770			NAD(P)-binding Rossmann-fold s...		Lus10012575 [exp]	10.5	0.9090
AT2G36090			F-box family protein (.1)		Lus10021330 [exp]	14.7	0.8815

Compare expression of checked genes

Lus10001141 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.