Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21690 641 / 0 MATE efflux family protein (.1) AT1G11670 597 / 0 MATE efflux family protein (.1) AT1G61890 589 / 0 MATE efflux family protein (.1) AT4G21910 536 / 0 MATE efflux family protein (.1.2.3.4) AT4G21903 518 / 0 MATE efflux family protein (.1.2) AT1G47530 410 / 5e-139 MATE efflux family protein (.1) AT1G12950 395 / 7e-133 RSH2 root hair specific 2 (.1) AT3G26590 392 / 6e-132 MATE efflux family protein (.1) AT5G38030 392 / 9e-132 MATE efflux family protein (.1) AT3G59030 390 / 5e-131 ATTT12, TT12 TRANSPARENT TESTA 12, A. THALIANA TRANSPARENT TESTA, MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002067 [exp] 914 / 0 AT3G21690 702 / 0.0 MATE efflux family protein (.1) Lus10027169 [exp] 637 / 0 AT3G21690 740 / 0.0 MATE efflux family protein (.1) Lus10020049 [exp] 597 / 0 AT3G21690 640 / 0.0 MATE efflux family protein (.1) Lus10027168 [exp] 561 / 0 AT3G21690 643 / 0.0 MATE efflux family protein (.1) Lus10039673 [exp] 553 / 0 AT4G21910 650 / 0.0 MATE efflux family protein (.1.2.3.4) Lus10042130 [exp] 409 / 1e-138 AT1G47530 704 / 0.0 MATE efflux family protein (.1) Lus10036854 [exp] 406 / 3e-137 AT3G26590 666 / 0.0 MATE efflux family protein (.1) Lus10006206 [exp] 397 / 9e-134 AT3G26590 664 / 0.0 MATE efflux family protein (.1) Lus10006205 [exp] 397 / 1e-133 AT3G26590 686 / 0.0 MATE efflux family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G002800 [exp] 720 / 0 AT3G21690 656 / 0.0 MATE efflux family protein (.1) Potri.004G016400 [exp] 713 / 0 AT3G21690 646 / 0.0 MATE efflux family protein (.1) Potri.011G002700 [exp] 712 / 0 AT3G21690 646 / 0.0 MATE efflux family protein (.1) Potri.011G002900 [exp] 710 / 0 AT3G21690 654 / 0.0 MATE efflux family protein (.1) Potri.011G002600 [exp] 669 / 0 AT3G21690 610 / 0.0 MATE efflux family protein (.1) Potri.014G153100 [exp] 645 / 0 AT3G21690 704 / 0.0 MATE efflux family protein (.1) Potri.011G002200 [exp] 634 / 0 AT1G11670 669 / 0.0 MATE efflux family protein (.1) Potri.011G002500 [exp] 620 / 0 AT3G21690 613 / 0.0 MATE efflux family protein (.1) Potri.011G002400 [exp] 594 / 0 AT3G21690 636 / 0.0 MATE efflux family protein (.1) Potri.002G055100 [exp] 414 / 1e-140 AT3G59030 719 / 0.0 TRANSPARENT TESTA 12, A. THALIANA TRANSPARENT TESTA, MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [flax] [poplar] MviN_MATE PF01554 [flax] [poplar] MatE MatE
Representative CDS sequence Show only first row Show all	>Lus10001142 pacid=23156342 polypeptide=Lus10001142 locus=Lus10001142.g ID=Lus10001142.BGIv1.0 annot-version=v1.0 ATGCTGAGCTCTTCGCAACCTTTGCTACAGAGCTTCAGGGCTTCCAATCTGGAGGATGTGAGCTCGGAGCTTGAGGACATCCTCACTGATCCCCATACTC CTTACTGGAAGCGGCTCAGAGGCGCCACGAGAATTGAACTCGGTTTGCTTTTCACGCTCGCCGCTCCTGCCGTCGTCGTCTACCTCCTTAACAATGTGGT CTCCATGTCCACCCAGATCTTCTGCGGCCACCTCGGTAATCTCGAGCTCGCCGCCGTCTCCCTTGGCAACACCGGCATCCAAGTCTTCGCTTACGGTCTC ATGCTTGGAATGGGAAGTGCGGTAGAAACTCTGTGCGGGCAAGCCTACGGTGCCAACAGATTCGAAACTCTGGGAATCTATCTTCAACGGTCCACAATCC TTCTAGTAGCGACAGGACTCCCACTAATGGTGGTCTACATCTTCTGCAAGCCCATTCTAATCCTACTGGGAGAGCCGTCCAACATAGCCGCAGCAGCTTC CATCTTTGTCTACGGGCTGATCCCGCAGATATTCGCATATGCGGCCAACTTCCCAATACAGAAGTTTCTCCAGTCTCAGAGCATCATAGCACCCAGCGCG TACATCTCCCTCGCGGCGCTGGCGGTCCACCTGGTGCTATCGTGGCTGGCCATATACAAGTGGGGGTGGGGCTTGCTGGGTGCTGGTTTGATACTGAGTT TGTCGTGGTGGCTGATTGTGGTGGCCCAGTTCGCGTACATAGTGTGCAGCAAGAGGTGTAAGAAGACGTGGCAAGGGTTCAACGTTCAGGCATTTTCTGG GCTGTGGGGGTTCTTCAAGCTTTCTGCTGCTTCCGCTGTTATGCTTTGCTTGGAGACTTGGTATTTCCAGATTCTGGTCCTCATTGCTGGCTTGCTCCCC GATCCCGAGATCGCTCTCGATTCTCTTTCCGTCTGTATGACAATATCAGGATGGGTTTACATGATATCCGTTGGTTTCAACGCTGCAGCCAGTGTACGAG TGAGCAACGAGCTAGGAGCAGGGCATCCGAAGTCAGCATCGTTCTCGGTGATGATCGTGACATGGTCATCGTTCATAATAGCGGTGATCGCGGCCATCAT AGTGATGTCATTGCGGGACGTGCTGAGTTATGTGTTTACGGAAGGGGAAGTTGTAGCTGCGGCGGTGTCTGATCTCAGCCCATTCCTCGCGATAACTCTC ATCTTAAACGGGATCCAACCGGTTCTCTCTGGAGTGGCAGTGGGATGTGGATGGCAAGCATTTGTGGCTTATGTGAACGTGGGTTGTTACTACATCATTG GAGTCCCCGCCGGTGTCCTCCTTGGTTTTACTTTTAACCTTGGAGCTAAGGGTATTTGGTCTGGAATGATTGGAGGCACATTCTTGCAAACATTGATACT CATTTGGACCACTTACAGGACCGACTGGAATACAGAGGTGGAGAAGGCCAAAGAAAGGCTGACTACGTGGGACGATTACAAGAAGGAAGTTATGGCCGCC GATAGCCAAGAAAGATTGCTGCTGTCTTAG
AA sequence Show only first row Show all	>Lus10001142 pacid=23156342 polypeptide=Lus10001142 locus=Lus10001142.g ID=Lus10001142.BGIv1.0 annot-version=v1.0 MLSSSQPLLQSFRASNLEDVSSELEDILTDPHTPYWKRLRGATRIELGLLFTLAAPAVVVYLLNNVVSMSTQIFCGHLGNLELAAVSLGNTGIQVFAYGL MLGMGSAVETLCGQAYGANRFETLGIYLQRSTILLVATGLPLMVVYIFCKPILILLGEPSNIAAAASIFVYGLIPQIFAYAANFPIQKFLQSQSIIAPSA YISLAALAVHLVLSWLAIYKWGWGLLGAGLILSLSWWLIVVAQFAYIVCSKRCKKTWQGFNVQAFSGLWGFFKLSAASAVMLCLETWYFQILVLIAGLLP DPEIALDSLSVCMTISGWVYMISVGFNAAASVRVSNELGAGHPKSASFSVMIVTWSSFIIAVIAAIIVMSLRDVLSYVFTEGEVVAAAVSDLSPFLAITL ILNGIQPVLSGVAVGCGWQAFVAYVNVGCYYIIGVPAGVLLGFTFNLGAKGIWSGMIGGTFLQTLILIWTTYRTDWNTEVEKAKERLTTWDDYKKEVMAA DSQERLLLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G21690			MATE efflux family protein (.1...		Lus10001142 [exp]	0	1
AT2G35270	AT-hook	GIK, 2-ATH, AHL...	GIANT KILLER, Predicted AT-hoo...		Lus10000519 [exp]	3.0	0.8610
AT5G03380			Heavy metal transport/detoxifi...		Lus10021516 [exp]	6.3	0.8854
AT4G39230			NmrA-like negative transcripti...		Lus10023557 [exp]	6.7	0.8821
AT5G49760			Leucine-rich repeat protein ki...		Lus10007587 [exp]	6.8	0.9100
AT3G12160		AtRABA4d	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10023829 [exp]	8.5	0.8879
AT5G25220	HD	KNAT3	KNOTTED1-like homeobox gene 3 ...		Lus10003183 [exp]	9.5	0.8948
AT2G41480			Peroxidase superfamily protein...		Lus10020421 [exp]	17.7	0.8474
AT1G08230		ATGAT1	L-GAMMA-AMINOBUTYRIC ACID TRAN...		Lus10009386 [exp]	19.1	0.8573
AT2G48030			DNAse I-like superfamily prote...		Lus10042675 [exp]	19.2	0.8661
AT3G54010		DEI1, PAS1	PASTICCINO 1, FKBP-type peptid...		Lus10022603 [exp]	21.7	0.8598

Compare expression of checked genes

Lus10001142 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.