Plant FIBer expression Database

Lus10001143 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G21920 61 / 9e-13 unknown protein
AT3G20340 46 / 3e-07 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10002068
[exp]
177 / 1e-58 AT4G21920 65 / 1e-14 unknown protein
Lus10006774
[exp]
92 / 7e-25 AT4G21920 62 / 5e-13 unknown protein
Lus10021518
[exp]
61 / 9e-13 AT3G20340 71 / 7e-17 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G015900
[exp]
90 / 3e-24 AT4G21920 55 / 1e-10 unknown protein
Potri.011G003100
[exp]
82 / 4e-21 AT3G20340 60 / 1e-12 unknown protein
Potri.011G139400
[exp]
50 / 5e-09 AT3G20340 47 / 5e-08 unknown protein
PFAM info
Representative CDS sequence
>Lus10001143 pacid=23156349 polypeptide=Lus10001143 locus=Lus10001143.g ID=Lus10001143.BGIv1.0 annot-version=v1.0
ATGGGAAACTGCTGCAGGGGAGCATCACGGGGCGCAGTTTGGGCCGGTGACGATTGGGAATGCGTCGACCAACACTATAAAGTTCTGTTCGATGCAGACG
ACGATGCTGACCATGAAAATGATTTTACCGCCGACGAAGGGAACAGGCTACTTCCTGCTGACTCATCCTCGTCGTCGTCGTCGAGCAAGGAGGTGAAGAT
AAAGATATCTAGAAGGGAGCTGGAAGAGTTGATGTCGAGAGCAGAGCAACTTGGATTGTCCTCGGAACAAGTCCTAGCTAGGCTGATCTTATCAGCTGGT
AATAATAGCAGCTTGTTTCATGATCTACAAGCAGAACTTCATCACAGACACTGGAAGCCTGCCCTTCAAAGCATCCCTGAGCTTAACTGA
AA sequence
>Lus10001143 pacid=23156349 polypeptide=Lus10001143 locus=Lus10001143.g ID=Lus10001143.BGIv1.0 annot-version=v1.0
MGNCCRGASRGAVWAGDDWECVDQHYKVLFDADDDADHENDFTADEGNRLLPADSSSSSSSSKEVKIKISRRELEELMSRAEQLGLSSEQVLARLILSAG
NNSSLFHDLQAELHHRHWKPALQSIPELN

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G21920 unknown protein Lus10001143
[exp]
0 1
AT2G37380 MAKR3 MEMBRANE-ASSOCIATED KINASE REG... Lus10025286
[exp]
1.4 0.9676
AT1G57610 Protein of unknown function (D... Lus10034435
[exp]
1.7 0.9616
AT4G34030 MCCB 3-methylcrotonyl-CoA carboxyla... Lus10014068
[exp]
3.7 0.9639
AT3G54110 ATUCP1, UCP1, U... ARABIDOPSIS THALIANA UNCOUPLIN... Lus10027755
[exp]
7.2 0.9425
AT2G32190 unknown protein Lus10039015
[exp]
7.3 0.9404
AT5G53050 alpha/beta-Hydrolases superfam... Lus10022392
[exp]
9.2 0.9410
AT4G16850 unknown protein Lus10015507
[exp]
9.7 0.9403
AT3G03050 RHD7, ATCSLD3, ... ROOT HAIR DEFECTIVE 7, KOJAK, ... Lus10002134
[exp]
9.9 0.9421
AT5G38760 Late embryogenesis abundant pr... Lus10003046
[exp]
10.0 0.9398
AT1G61215 BRD4 bromodomain 4 (.1) Lus10011227
[exp]
10.4 0.9354

Lus10001143 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.