Plant FIBer expression Database

Lus10001144 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10002069
[exp]
194 / 9e-59 AT1G50660 147 / 6e-38 unknown protein
Lus10002072
[exp]
86 / 2e-20 AT1G50660 48 / 5e-07 unknown protein
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10001144 pacid=23156341 polypeptide=Lus10001144 locus=Lus10001144.g ID=Lus10001144.BGIv1.0 annot-version=v1.0
ATGGCCACCCCCACTACTTCACAACAAATGATTCCTCCAAACTACTCCGTCCGACGGAAGGGATCACACTCAACATCTCTCTTCCGCTACCCAACCACCC
CTGCCCTTGATTGGAAGTTGTTTGATGGAGCCAGTAAGGTGGTCAGTACTGCTACTTCTTCTAGGGAGCTCGCTGCTGGCTTGTGGCAGTTGCAGTTGTC
AGATGGACGACGTCGCACCGCCAACCGTCCTCGTGGCTCACGTGATCATGATGTTCGACTAGGAACCAATGATCTTCGAAACAATATGGAAGATGAGACT
AGGCCACCATCGTTGGCACTAAAAACCAAGTATCATAAAGTGTTTGAGATGATTTCGCAACTCGAGGATTTTCGAAACAATATGGAAGATGAGACTAGAC
CACCATCGACTGATTTGTACACCATAATCCGAGACGCTGATCATCAAGGCAGTGTTAAGGTTTTAAGAGAGTGCAATATTAATAGGGATCAAATTGGGAG
TAATATAAGCTCCTCCGGCTGGAGTCCCAACGGAAGCGAAGGCTTGATTGTAGTTCGGAACATGGCACATACTAGAATCGACGGATTCCGAGGAAGTCAG
GGGAAGATTGAATATTGTGTTTGGGAATGGAACTTTGCAAAGCTGTTGAATCCTCACATCACTCGAGGGGTGAAAGGCAGCATTAAATTGCCACGAGGTT
CTGGAAAATGCACGTCGTCATCAAAGGGGGTGTTCAACATAGCTACACCAATCCCAAAAACAAACAAGATATTGGGGTCATATCAAGATAGTGTGGACAG
CGGGGTCCGACACTTGCAAAACGGTAAGCTAATCGAGGCAGGAAATGGGCTATCTTTTTACGGCCTTTACCTCATTGATCTGCATTCATAA
AA sequence
>Lus10001144 pacid=23156341 polypeptide=Lus10001144 locus=Lus10001144.g ID=Lus10001144.BGIv1.0 annot-version=v1.0
MATPTTSQQMIPPNYSVRRKGSHSTSLFRYPTTPALDWKLFDGASKVVSTATSSRELAAGLWQLQLSDGRRRTANRPRGSRDHDVRLGTNDLRNNMEDET
RPPSLALKTKYHKVFEMISQLEDFRNNMEDETRPPSTDLYTIIRDADHQGSVKVLRECNINRDQIGSNISSSGWSPNGSEGLIVVRNMAHTRIDGFRGSQ
GKIEYCVWEWNFAKLLNPHITRGVKGSIKLPRGSGKCTSSSKGVFNIATPIPKTNKILGSYQDSVDSGVRHLQNGKLIEAGNGLSFYGLYLIDLHS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10001144
[exp]
0 1
AT1G01800 NAD(P)-binding Rossmann-fold s... Lus10006895
[exp]
1.4 0.8757
AT1G31260 ZIP10 zinc transporter 10 precursor ... Lus10040615
[exp]
5.9 0.8481
AT5G39150 RmlC-like cupins superfamily p... Lus10006543
[exp]
15.0 0.8517
AT2G18680 unknown protein Lus10015508
[exp]
15.9 0.8027
AT5G14420 RGLG2 RING domain ligase2 (.1.2.3.4) Lus10033491
[exp]
16.9 0.8543
AT3G12120 FAD2 fatty acid desaturase 2 (.1.2) Lus10004177
[exp]
16.9 0.8274
AT2G39210 Major facilitator superfamily ... Lus10022614
[exp]
17.1 0.8145
AT4G10300 RmlC-like cupins superfamily p... Lus10037245
[exp]
17.7 0.8518
AT3G03530 NPC4 non-specific phospholipase C4 ... Lus10028492
[exp]
18.3 0.7822
Lus10030647
[exp]
21.4 0.7491

Lus10001144 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.