Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04720 292 / 9e-97 CPK21 calcium-dependent protein kinase 21 (.1) AT1G50700 281 / 1e-92 CPK33 calcium-dependent protein kinase 33 (.1) AT3G20410 280 / 9e-92 CPK9 calmodulin-domain protein kinase 9 (.1) AT4G21940 277 / 1e-90 CPK15 calcium-dependent protein kinase 15 (.1.2) AT1G61950 260 / 6e-84 CPK19 calcium-dependent protein kinase 19 (.1) AT5G12180 259 / 8e-84 CPK17 calcium-dependent protein kinase 17 (.1) AT5G19360 252 / 3e-81 CPK34 calcium-dependent protein kinase 34 (.1) AT1G76040 251 / 3e-80 CPK29 calcium-dependent protein kinase 29 (.1.2) AT4G04740 231 / 4e-73 CPK23, ATCPK23 calcium-dependent protein kinase 23 (.1.2) AT4G23650 229 / 3e-72 CDPK6, CPK3 Calcium dependent protein kinase 3, calcium-dependent protein kinase 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002074 [exp] 394 / 1e-140 AT4G04720 323 / 1e-108 calcium-dependent protein kinase 21 (.1) Lus10020046 [exp] 298 / 5e-99 AT4G04720 764 / 0.0 calcium-dependent protein kinase 21 (.1) Lus10006777 [exp] 297 / 1e-98 AT4G04720 764 / 0.0 calcium-dependent protein kinase 21 (.1) Lus10021531 [exp] 285 / 7e-94 AT3G20410 831 / 0.0 calmodulin-domain protein kinase 9 (.1) Lus10040071 [exp] 285 / 1e-93 AT3G20410 825 / 0.0 calmodulin-domain protein kinase 9 (.1) Lus10017251 [exp] 271 / 9e-89 AT1G76040 807 / 0.0 calcium-dependent protein kinase 29 (.1.2) Lus10032640 [exp] 268 / 2e-87 AT3G20410 790 / 0.0 calmodulin-domain protein kinase 9 (.1) Lus10005619 [exp] 271 / 4e-85 AT1G76040 773 / 0.0 calcium-dependent protein kinase 29 (.1.2) Lus10038460 [exp] 249 / 1e-79 AT5G12180 916 / 0.0 calcium-dependent protein kinase 17 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G015500 [exp] 307 / 2e-102 AT4G04720 797 / 0.0 calcium-dependent protein kinase 21 (.1) Potri.011G003400 [exp] 305 / 8e-102 AT4G04720 815 / 0.0 calcium-dependent protein kinase 21 (.1) Potri.005G245000 [exp] 268 / 2e-87 AT1G76040 729 / 0.0 calcium-dependent protein kinase 29 (.1.2) Potri.002G017000 [exp] 262 / 5e-85 AT1G76040 758 / 0.0 calcium-dependent protein kinase 29 (.1.2) Potri.001G274700 [exp] 244 / 7e-78 AT5G12180 909 / 0.0 calcium-dependent protein kinase 17 (.1) Potri.009G069200 [exp] 243 / 1e-77 AT5G12180 914 / 0.0 calcium-dependent protein kinase 17 (.1) Potri.003G134000 [exp] 229 / 2e-72 AT4G23650 776 / 0.0 Calcium dependent protein kinase 3, calcium-dependent protein kinase 6 (.1) Potri.001G097400 [exp] 229 / 2e-72 AT4G23650 781 / 0.0 Calcium dependent protein kinase 3, calcium-dependent protein kinase 6 (.1) Potri.004G207300 [exp] 219 / 2e-68 AT2G17290 969 / 0.0 calcium dependent protein kinase 6, ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 6, ARABIDOPSIS THALIANA CALMODULIN-DOMAIN PROTEIN KINASE 3, Calcium-dependent protein kinase family protein (.1) Potri.019G083200 [exp] 218 / 5e-68 AT4G09570 835 / 0.0 calcium-dependent protein kinase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10001145 pacid=23156344 polypeptide=Lus10001145 locus=Lus10001145.g ID=Lus10001145.BGIv1.0 annot-version=v1.0 ATGGGATGTTGCAGTAGCAAAGGAGGAGACTCTGCTGCTTCCAAGCAGCCAGACTTCAATGGCTACACGGCAGCTCACCCTGTTCCCACCTACCAACAAC ATCCACACCAGCCGACACACTCCCAACAGCCGCAGCCGGTGGTGGCCACCAAGTCAGCTACATCGACTCCCACGGCAAGGCCTGCAGTTCAGCAGTCAGG GGACACGATCTTGGGGAAGCCATTTGAAGACGTGAGGCAGTTGTACACACTGGGGAAAGAATTGGGTCGAGGCCAGTTCGGCATTACTTACCTGTGTACC GAGAATTCCACAGGACATACCTACGCCTGCAAATCCATACTGAAGAGAAAACTGAAGAGCAAGAGCGATAGGGAGGATGTGAAGAGGGAGATTCAGATTA TGCAGCACTTGTCTGGTCAACCAAACATTGTTGAGTTCGAAGGTTGCTACGAGGACAGACAATCGGTGCATTTGGTGATGGAGCTATGCGCTGGTGGGGA GCTTTTTGATCGGATTATTGCAAAGGGTCATTACTCCGAGAAAGATGCTGCTAAGATTTGCAGGGAGATTGTCAATGTGGTCCACGCTTGCCATTTTATG GGGGTTATGCACCGTGATCTCAAGCCTGAGAATTTCCTCTTGTCTTCCAAGGATGAAGACGCTACCATTAAAGCCACCGACTTTGGACTCTCCGTTTTCA TTGAAGAAGGCAAATAA
AA sequence Show only first row Show all	>Lus10001145 pacid=23156344 polypeptide=Lus10001145 locus=Lus10001145.g ID=Lus10001145.BGIv1.0 annot-version=v1.0 MGCCSSKGGDSAASKQPDFNGYTAAHPVPTYQQHPHQPTHSQQPQPVVATKSATSTPTARPAVQQSGDTILGKPFEDVRQLYTLGKELGRGQFGITYLCT ENSTGHTYACKSILKRKLKSKSDREDVKREIQIMQHLSGQPNIVEFEGCYEDRQSVHLVMELCAGGELFDRIIAKGHYSEKDAAKICREIVNVVHACHFM GVMHRDLKPENFLLSSKDEDATIKATDFGLSVFIEEGK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G04720		CPK21	calcium-dependent protein kina...		Lus10001145 [exp]	0	1
AT3G18860			transducin family protein / WD...		Lus10011296 [exp]	2.4	0.8524
AT1G77180		SKIP	chromatin protein family (.1.2...		Lus10027157 [exp]	4.9	0.8097
AT5G04700			Ankyrin repeat family protein ...		Lus10019887 [exp]	8.5	0.8435
AT4G04720		CPK21	calcium-dependent protein kina...		Lus10002074 [exp]	13.4	0.8540
AT3G55020			Ypt/Rab-GAP domain of gyp1p su...		Lus10041425 [exp]	15.5	0.8141
AT5G59830			unknown protein		Lus10025307 [exp]	18.7	0.8023
AT3G01150		ATPTB1, PTB	polypyrimidine tract-binding p...		Lus10005233 [exp]	18.9	0.7855
AT5G19400		SMG7	Telomerase activating protein ...		Lus10009689 [exp]	23.0	0.7727
AT5G53480			ARM repeat superfamily protein...		Lus10008863 [exp]	29.5	0.8096
AT3G57890			Tubulin binding cofactor C dom...		Lus10021031 [exp]	30.2	0.7981

Compare expression of checked genes

Lus10001145 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.