Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04720 400 / 4e-139 CPK21 calcium-dependent protein kinase 21 (.1) AT4G21940 372 / 1e-127 CPK15 calcium-dependent protein kinase 15 (.1.2) AT1G50700 370 / 2e-127 CPK33 calcium-dependent protein kinase 33 (.1) AT3G20410 365 / 7e-125 CPK9 calmodulin-domain protein kinase 9 (.1) AT4G04740 353 / 1e-120 CPK23, ATCPK23 calcium-dependent protein kinase 23 (.1.2) AT1G76040 330 / 2e-114 CPK29 calcium-dependent protein kinase 29 (.1.2) AT1G61950 336 / 2e-113 CPK19 calcium-dependent protein kinase 19 (.1) AT4G23650 325 / 2e-109 CDPK6, CPK3 Calcium dependent protein kinase 3, calcium-dependent protein kinase 6 (.1) AT5G19360 315 / 7e-106 CPK34 calcium-dependent protein kinase 34 (.1) AT5G12180 314 / 2e-105 CPK17 calcium-dependent protein kinase 17 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002075 [exp] 452 / 1e-162 AT4G04720 536 / 0.0 calcium-dependent protein kinase 21 (.1) Lus10021531 [exp] 395 / 9e-137 AT3G20410 831 / 0.0 calmodulin-domain protein kinase 9 (.1) Lus10040071 [exp] 392 / 8e-136 AT3G20410 825 / 0.0 calmodulin-domain protein kinase 9 (.1) Lus10006777 [exp] 387 / 8e-134 AT4G04720 764 / 0.0 calcium-dependent protein kinase 21 (.1) Lus10020046 [exp] 385 / 4e-133 AT4G04720 764 / 0.0 calcium-dependent protein kinase 21 (.1) Lus10032640 [exp] 377 / 3e-130 AT3G20410 790 / 0.0 calmodulin-domain protein kinase 9 (.1) Lus10023346 [exp] 340 / 6e-116 AT5G12180 780 / 0.0 calcium-dependent protein kinase 17 (.1) Lus10017251 [exp] 340 / 2e-115 AT1G76040 807 / 0.0 calcium-dependent protein kinase 29 (.1.2) Lus10017537 [exp] 316 / 9e-107 AT4G23650 803 / 0.0 Calcium dependent protein kinase 3, calcium-dependent protein kinase 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G003400 [exp] 396 / 2e-137 AT4G04720 815 / 0.0 calcium-dependent protein kinase 21 (.1) Potri.004G015500 [exp] 380 / 3e-131 AT4G04720 797 / 0.0 calcium-dependent protein kinase 21 (.1) Potri.002G017000 [exp] 340 / 5e-115 AT1G76040 758 / 0.0 calcium-dependent protein kinase 29 (.1.2) Potri.005G245000 [exp] 321 / 4e-108 AT1G76040 729 / 0.0 calcium-dependent protein kinase 29 (.1.2) Potri.001G097400 [exp] 318 / 6e-107 AT4G23650 781 / 0.0 Calcium dependent protein kinase 3, calcium-dependent protein kinase 6 (.1) Potri.009G069200 [exp] 315 / 7e-106 AT5G12180 914 / 0.0 calcium-dependent protein kinase 17 (.1) Potri.003G134000 [exp] 313 / 7e-105 AT4G23650 776 / 0.0 Calcium dependent protein kinase 3, calcium-dependent protein kinase 6 (.1) Potri.001G274700 [exp] 311 / 3e-104 AT5G12180 909 / 0.0 calcium-dependent protein kinase 17 (.1) Potri.010G244800 [exp] 293 / 2e-96 AT5G04870 899 / 0.0 calcium dependent protein kinase 1 (.1) Potri.008G014700 [exp] 293 / 3e-96 AT5G04870 922 / 0.0 calcium dependent protein kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0220 [flax] [poplar] EF_hand PF00036 [flax] [poplar] EF-hand_1 EF hand
Representative CDS sequence Show only first row Show all	>Lus10001146 pacid=23156346 polypeptide=Lus10001146 locus=Lus10001146.g ID=Lus10001146.BGIv1.0 annot-version=v1.0 ATGTCAACGTGGGGAAAAGTATACAGAGACATAGTCGGCAGTGCGTACTATGTTGCTCCTCAAGTCTTGCGCCGTAGTTATGGGAAGGAGATTGATATTT GGAGTGCAGGTGTTATTTTGTACATTCTCCTCAGTGGTGTGCCTCCGTTTTGGGCAGAGAATGAAAAAGGAATATTTGATGCTGTTCTCCAAGGAGAGAT TGATTTTGAAAGTGATCCCTGGCCTACTATATCTGACAGTGCCAAGGATCTGATTAGGAAGATGCTCACTCAGGATCCAAAAAAGCGTTTGACTTCTGCA CAAGTTCTTGAGCATCCGTGGATCAAGGGTGGTGCAGCATCGGACAAACCAATTGGCAGTGCGGTGTTGTCTAGAATGAAGCAATTCAGGGCAATGAATA ATATGAAGAAACTTGCCTTGAAGGCTGACGTGGATGGAAATGGAACAATCGACTACACAGAATTCATCTCTGCAACAATGCACAGATACAAGATTGAAAG AGATGAGCATCTGTACACAGCATTTCAGCACTTTGATAAGGATGGCAGTGGGTACATAACAAGAGATGAACTAGAATCCGCAATGTTGGAGTATGGAATA GGGGATGAGGCCAGCATAAAGCAGATCATTACTGAAGTCGATACAGACAATGATGGGAAAATCAACTACGATGAATTCTGTGCCATGATGAGAAGTGGAT CGGAAGTTCAAGGGAAGCTTTTGTAA
AA sequence Show only first row Show all	>Lus10001146 pacid=23156346 polypeptide=Lus10001146 locus=Lus10001146.g ID=Lus10001146.BGIv1.0 annot-version=v1.0 MSTWGKVYRDIVGSAYYVAPQVLRRSYGKEIDIWSAGVILYILLSGVPPFWAENEKGIFDAVLQGEIDFESDPWPTISDSAKDLIRKMLTQDPKKRLTSA QVLEHPWIKGGAASDKPIGSAVLSRMKQFRAMNNMKKLALKADVDGNGTIDYTEFISATMHRYKIERDEHLYTAFQHFDKDGSGYITRDELESAMLEYGI GDEASIKQIITEVDTDNDGKINYDEFCAMMRSGSEVQGKLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G50700		CPK33	calcium-dependent protein kina...		Lus10001146 [exp]	0	1
AT5G57330			Galactose mutarotase-like supe...		Lus10015540 [exp]	4.6	0.8828
AT4G11260		RPR1, ETA3, EDM...	ENHANCER OF TIR1-1 AUXIN RESIS...		Lus10039297 [exp]	9.5	0.8780
AT4G34270			TIP41-like family protein (.1)		Lus10020231 [exp]	13.3	0.8676
AT4G21790		ATTOM1, TOM1	tobamovirus multiplication 1 (...		Lus10007663 [exp]	22.2	0.8742
AT5G27400			S-adenosyl-L-methionine-depend...		Lus10015166 [exp]	26.9	0.8697
AT3G22560			Acyl-CoA N-acyltransferases (N...		Lus10021914 [exp]	31.0	0.8653
AT4G09510		A/N-InvI, CINV2	alkaline/neutral invertase I, ...		Lus10014824 [exp]	32.5	0.8347
AT3G60540			Preprotein translocase Sec, Se...		Lus10037570 [exp]	33.7	0.8591
AT5G11970			Protein of unknown function (D...		Lus10017155 [exp]	34.9	0.8649
AT5G59613			unknown protein		Lus10005899 [exp]	36.3	0.8713

Compare expression of checked genes

Lus10001146 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.