Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64570 401 / 2e-119 DUO3 DUO POLLEN 3, Homeodomain-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002076 [exp] 1275 / 0 AT1G64570 612 / 0.0 DUO POLLEN 3, Homeodomain-like superfamily protein (.1) Lus10002077 [exp] 85 / 2e-19 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G003500 [exp] 626 / 0 AT1G64570 505 / 5e-156 DUO POLLEN 3, Homeodomain-like superfamily protein (.1) Potri.004G015034 [exp] 175 / 2e-49 AT1G64570 151 / 1e-41 DUO POLLEN 3, Homeodomain-like superfamily protein (.1) Potri.004G015001 [exp] 104 / 2e-24 AT1G64570 69 / 3e-13 DUO POLLEN 3, Homeodomain-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001147 pacid=23156348 polypeptide=Lus10001147 locus=Lus10001147.g ID=Lus10001147.BGIv1.0 annot-version=v1.0 ATGCCCTCGTGCATGACTGAGACTGACCAACCGGAGGAACCACGATATGGTTCACCCAGTGACAAGGAGAGTCCTATGGTGGCGGGAGAGAATGAGAATG AAAATAGTGATGAGGAAGAAGAAGAAGAGGATGTCGATTTCAATCCATTCTTGAAAGGGACTCCTTCACCTGAAGCTTCTTCAAGTTTGAGCTCGGAAAT GGAAGGTCCAGATGATACTTGCTCCACAAAGCCAATGGGTGAGCTTCAGAACTATGACGATGTGGGACATTCTGAACATGGAGAAGAGGTTGTAATGCAA ACCGCAGTTTCTTCTTCTGAGGGTGAACCAAAATCGGGGAAGCCTCTTCAAAGCAGAGGGAAGAAGAGAAAATTGGATTCCACTTCTGAGTTGGAAAATG ACTCCGTAAAGAACGAATTTAATTTTAATGAAAATGAAGATGATGATGAAGACGCCATCTGCAAGCGCACTAGAGCCCGTTATTCACTTGCAAGATTCAC ACTTGATGAACTTGAGACTTTTCTCCAGGAAACAGATGACGAGGATGATCTACAGAATGTCGATGACGAAGAAGAGTACAGGAAGTTTCTTGCTGCTGTT TTACACTCTGGAGAAGGTGATGATCAATCAGCACAAGCTCCAGATAAATGTGATGATGAGGATGAGGAGAACGATGCAGATTTTGAGATAGAACTTGAAG AGCTGCTTGATAGTGATCTTGATGATGTGATTAGAGATAAGGATCAGAAAATGAATTCTGAGGAAGGAAGGCGCAGACCAGAAACCAGACAGAATAGAAG CCGCAAAGCTTCTGTTAGGCATAAGAAGAAGCTTTTGGAACAGGGAAAGAGACCATTGCGTCCCCGTCTACCTATGTTACCGAATGGTGGGGTGGCCTAC AGAATGGTGGGATGGCCTCATTTTCCAGTTGAAGTAAGGGCATGGAAAACTAAATCATTTCCTGGCATTTGCTTCCAACCTCCTTACCTGTGTCCGTCAG TTGTAGATGAGTTTTCCAACCATCTACCTTTACAGTCTTCTACAGTATCATCCCGCGGCCAACTCTCACAAATGCTCATCACACAAAACTGTTCTAAGGA GAGTGACGAGCCTACTTTGGATATGCAGAAGAATACTCCACAAGCTGTTGAATCTTTCTGGGTACCTTCGGTTAGGGGCTCGATATTGTCTGTTCTGGAT GTTGCTCCACTTCATTTGGTTGGAAAATTTGTGGAAGATTTTTGCATTGCTGGGAAACAGTACCTAAGGCGTTGTGCTGAACCTAGTTTCGATGCTCAAT ACGAGAAGGAACCCCTCTTCCAACTTCCTTATTATCCATCTCTTTGTGAGGTCAATGGTGATGTTCAACGAGCAAATGATTCTTCAGCAACAGATGCAGC ACCATCTACACTTGGCCAACAACTGCCTAAGAAGACACGGGCTGCAGCCATTGTGGAACGTGCCAAGAAGCAATCAATTGCTTTGGTTCCAAAAGATGTT AGCAAGTTGGCTCAGAGATTTTCCCCATTTTTCAATCCAGCATTGTTTCCACATAAGTCACCCCCTACGGCTGTAACAAATAGGATCCTGTTTACTGATG CAGAGGATGAATTGTTGGCATTGGGAATGATGGAATATAATACAGATTGGAAGGCAATTCAGCAGCGATTCCTTCCTTGCAAATCCAAGCACCAGACAGT TCGTAAGATGAAAACCTCTCCATTAAGTGCCGAAGAAGTCGAGCGTATTCAAGAGGGACTTCGAGCCTGCAAACTGGACTGGATGTCAATATGGAAATTC ATTGTCCCTTACAGAGACCCTTCTTTATTACCTCGGCAATGGCGGCTTGCCCTTGGTACTCAGAAGTCATATAAGCAAGATGCTGATAAAAAGGAGAGAC GGCGAATATATGAATCAAACAGGAGGAGCAAAGCTGCAGAATTGTTAAATCAGCAAACGACAGTAGATAGAGAGGAAAATCAGCTTGGTAGCAGCAATTT ACATAAGGGAAGAGACCATTCTGTAGAATATGTGACCGAATCTTATGTTCATCAGGCATTTTTGGCCGAGTGGGCACCAGTCTTTTCGAGTCCTATATTG CCTGCTAACCTTATAGAAAAAGGCCTGCCAGGAAATTCATCAAATCAAAGTCATCAGTTAGCTACTGGTGAAGCTCAGAACCAAAGTGGTAACATGCATG TACTTTCATGTACAATGTCTCCTTTCACTCAGTCTAGAAACTCTCCTGATACTACTCAACAAAACCAACCTACTTCCCAAGTGACGGTGGATACTTCCAA GCCAAAAAACTATTCGTGGTCACACCGGACTCGTAAGGTTGCTGGTGCACGCTTGGTTAAATTAGCACCAGAGCTACCTCCTGTGAATCTTCCACCATCT GTTCGTGTAATATCCCAGTCAGCTTTCAGAAACAACCAATCTGGAGCATTGTCTAGGGTTTCTAGTACAGGTTGTAAGAGTGATTCTGGAAATGAAGGTA TCCCCCCTCTGCTTCTGGACAATATAAATCAGAGAACCACCAGTTCTGTACCAGTTACAGGGATTGCATGTGACGGAGAACTTAAGAACACCACAAATCC ATGTAGAGAATATTCACCTGTCACCAATGATGCATGTCAGGAAGAAAGTGAAAATAACTCTGACCTTCAGATGCATCCTTTATTGTTCAAGACCGCTGAT GCTGAGCCCCTCCGTTGTTATCCATTGAAGTATACCTCTGATTCTTCTAGATCGTTACATCTAAATCTCAGTCTTTTTCATAATCCTCGCCAGATAAACT CTGTTGGTGATTCTTATGTTAAATCTGCTAGAACTGAGGAATGTTCTCCAGCATCAGGTGGCATCGACTTTCACCCTCTTCTGCAACAAGCTGATGGAGA AAAAAGTAACTCTGTAATGCATCCCTCTAATATCTACCAATCTGTTTCCCTGGGTGACAAACCTCGGAAATATCCATATCCTGGTGTTGTTGCCCAGAAT ACCACTGCATCTAAAGTGATAAGCCAGATTGTTCACGCTAATGAATTGGACCTTGAGATTCATTTAAGTTCTGCATCTAGAAATGAGAAGAAAAGGAGGC CGAGAGATGGTAATTTAGTTAATGAATCAACTTCAGTGAAAGGCTCCATTGATTGTGTTAATGTCATGGAAACTTGTGAAACTAGGACTCCGTGCCATCA ACTCAACGAGAGGAGACCTATGGTTAAGAGCAGCCTTATTTCAGAGGCTGATGCATCTGGGCCTGTAAGCAATATTGATGATGTGGTTGGTGAATCTCTG CAAGAGATTGTGATGGAACAAGAAGAGCTGAGTGACTCTGATGAAGAATTTGAAGAAAATGTAGAATTCGAGTGTGAGGAGATGACGGATTCCGAGGGAG AAGAGGGTTCTGGCTCTAAATCAATGTTTGATGGCCAAGCCGAGACGGAAAATTCTTGTCCTGGGACAGAGAAGGTTGTAAGTGACAACAGTTGTGCGGC AGGGATAGGGAGTCCTGCGTTGAAGTTAAGTCTGACTATGCTGGGGAAGGATGAAGATAGTAACACTTGGTTAAGCTTAGACTCAGGGGCACCCGTTGAG CATCAAAACGTGAGAAGGAAGCAGGGGAGTCATGATGTTGAAGAAGGTGGACTTATTGAGGAAACCTGCCAAAAAGTAGCCGAGTTGGCAGAAGCGGCTA CTAAAGAGCTGGATGTTGCAGACACAACGTAG
AA sequence Show only first row Show all	>Lus10001147 pacid=23156348 polypeptide=Lus10001147 locus=Lus10001147.g ID=Lus10001147.BGIv1.0 annot-version=v1.0 MPSCMTETDQPEEPRYGSPSDKESPMVAGENENENSDEEEEEEDVDFNPFLKGTPSPEASSSLSSEMEGPDDTCSTKPMGELQNYDDVGHSEHGEEVVMQ TAVSSSEGEPKSGKPLQSRGKKRKLDSTSELENDSVKNEFNFNENEDDDEDAICKRTRARYSLARFTLDELETFLQETDDEDDLQNVDDEEEYRKFLAAV LHSGEGDDQSAQAPDKCDDEDEENDADFEIELEELLDSDLDDVIRDKDQKMNSEEGRRRPETRQNRSRKASVRHKKKLLEQGKRPLRPRLPMLPNGGVAY RMVGWPHFPVEVRAWKTKSFPGICFQPPYLCPSVVDEFSNHLPLQSSTVSSRGQLSQMLITQNCSKESDEPTLDMQKNTPQAVESFWVPSVRGSILSVLD VAPLHLVGKFVEDFCIAGKQYLRRCAEPSFDAQYEKEPLFQLPYYPSLCEVNGDVQRANDSSATDAAPSTLGQQLPKKTRAAAIVERAKKQSIALVPKDV SKLAQRFSPFFNPALFPHKSPPTAVTNRILFTDAEDELLALGMMEYNTDWKAIQQRFLPCKSKHQTVRKMKTSPLSAEEVERIQEGLRACKLDWMSIWKF IVPYRDPSLLPRQWRLALGTQKSYKQDADKKERRRIYESNRRSKAAELLNQQTTVDREENQLGSSNLHKGRDHSVEYVTESYVHQAFLAEWAPVFSSPIL PANLIEKGLPGNSSNQSHQLATGEAQNQSGNMHVLSCTMSPFTQSRNSPDTTQQNQPTSQVTVDTSKPKNYSWSHRTRKVAGARLVKLAPELPPVNLPPS VRVISQSAFRNNQSGALSRVSSTGCKSDSGNEGIPPLLLDNINQRTTSSVPVTGIACDGELKNTTNPCREYSPVTNDACQEESENNSDLQMHPLLFKTAD AEPLRCYPLKYTSDSSRSLHLNLSLFHNPRQINSVGDSYVKSARTEECSPASGGIDFHPLLQQADGEKSNSVMHPSNIYQSVSLGDKPRKYPYPGVVAQN TTASKVISQIVHANELDLEIHLSSASRNEKKRRPRDGNLVNESTSVKGSIDCVNVMETCETRTPCHQLNERRPMVKSSLISEADASGPVSNIDDVVGESL QEIVMEQEELSDSDEEFEENVEFECEEMTDSEGEEGSGSKSMFDGQAETENSCPGTEKVVSDNSCAAGIGSPALKLSLTMLGKDEDSNTWLSLDSGAPVE HQNVRRKQGSHDVEEGGLIEETCQKVAELAEAATKELDVADTT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G64570		DUO3	DUO POLLEN 3, Homeodomain-like...		Lus10001147 [exp]	0	1
AT2G06210		VIP6, ELF8	VERNALIZATION INDEPENDENCE 6, ...		Lus10000471 [exp]	3.7	0.9230
AT1G49340		ATPI4K ALPHA, A...	Phosphatidylinositol 3- and 4-...		Lus10011285 [exp]	4.0	0.9286
AT1G64570		DUO3	DUO POLLEN 3, Homeodomain-like...		Lus10002076 [exp]	5.0	0.9188
AT5G47010		ATUPF1, UPF1, L...	LOW-LEVEL BETA-AMYLASE 1, RNA ...		Lus10003024 [exp]	5.5	0.9195
AT3G05680		EMB2016	embryo defective 2016 (.1.2)		Lus10021265 [exp]	6.0	0.9191
AT3G61690			nucleotidyltransferases (.1)		Lus10030267 [exp]	6.3	0.8737
AT4G14920			Acyl-CoA N-acyltransferase wit...		Lus10006110 [exp]	7.4	0.9035
AT5G63110		RPD3B, CAT1, AX...	RNA-MEDIATED TRANSCRIPTIONAL S...		Lus10019486 [exp]	10.2	0.8871
AT4G21710		NRPB2, EMB1989	EMBRYO DEFECTIVE 1989, DNA-dir...		Lus10011182 [exp]	10.2	0.9115
AT5G47010		ATUPF1, UPF1, L...	LOW-LEVEL BETA-AMYLASE 1, RNA ...		Lus10011054 [exp]	10.8	0.9100

Compare expression of checked genes

Lus10001147 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.