Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05170 458 / 4e-161 Galactosyltransferase family protein (.1.2) AT2G32430 423 / 4e-147 Galactosyltransferase family protein (.1) AT1G11730 420 / 2e-146 Galactosyltransferase family protein (.1) AT1G77810 413 / 1e-143 Galactosyltransferase family protein (.1.2) AT1G32930 410 / 2e-142 Galactosyltransferase family protein (.1) AT4G26940 407 / 6e-141 Galactosyltransferase family protein (.1.2) AT1G22015 386 / 8e-133 DD46 Galactosyltransferase family protein (.1) AT1G33430 383 / 2e-131 Galactosyltransferase family protein (.1.2) AT5G53340 202 / 6e-62 Galactosyltransferase family protein (.1.2) AT2G25300 186 / 2e-55 Galactosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002079 [exp] 574 / 0 AT1G05170 293 / 2e-97 Galactosyltransferase family protein (.1.2) Lus10020042 [exp] 507 / 0 AT1G05170 503 / 2e-179 Galactosyltransferase family protein (.1.2) Lus10006782 [exp] 504 / 8e-179 AT1G05170 512 / 0.0 Galactosyltransferase family protein (.1.2) Lus10040062 [exp] 450 / 1e-157 AT1G05170 647 / 0.0 Galactosyltransferase family protein (.1.2) Lus10015107 [exp] 417 / 6e-145 AT1G05170 639 / 0.0 Galactosyltransferase family protein (.1.2) Lus10031567 [exp] 416 / 3e-144 AT1G05170 633 / 0.0 Galactosyltransferase family protein (.1.2) Lus10027185 [exp] 415 / 1e-143 AT1G05170 624 / 0.0 Galactosyltransferase family protein (.1.2) Lus10033248 [exp] 413 / 3e-143 AT1G32930 618 / 0.0 Galactosyltransferase family protein (.1) Lus10008282 [exp] 413 / 3e-143 AT1G32930 617 / 0.0 Galactosyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G004200 [exp] 479 / 1e-169 AT1G05170 520 / 0.0 Galactosyltransferase family protein (.1.2) Potri.004G013900 [exp] 471 / 2e-166 AT1G05170 547 / 0.0 Galactosyltransferase family protein (.1.2) Potri.014G153700 [exp] 447 / 1e-156 AT1G05170 699 / 0.0 Galactosyltransferase family protein (.1.2) Potri.002G228900 [exp] 428 / 3e-149 AT1G05170 673 / 0.0 Galactosyltransferase family protein (.1.2) Potri.001G450200 [exp] 417 / 9e-145 AT1G32930 625 / 0.0 Galactosyltransferase family protein (.1) Potri.005G171400 [exp] 402 / 4e-139 AT1G77810 594 / 0.0 Galactosyltransferase family protein (.1.2) Potri.002G089800 [exp] 402 / 5e-139 AT1G77810 611 / 0.0 Galactosyltransferase family protein (.1.2) Potri.011G151400 [exp] 399 / 1e-137 AT1G32930 615 / 0.0 Galactosyltransferase family protein (.1) Potri.019G067300 [exp] 377 / 1e-128 AT1G33430 560 / 0.0 Galactosyltransferase family protein (.1.2) Potri.015G023700 [exp] 207 / 1e-63 AT5G53340 521 / 0.0 Galactosyltransferase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF01762 [flax] [poplar] Galactosyl_T Galactosyltransferase
Representative CDS sequence Show only first row Show all	>Lus10001148 pacid=23156343 polypeptide=Lus10001148 locus=Lus10001148.g ID=Lus10001148.BGIv1.0 annot-version=v1.0 ATGGCATTTTTAACGGAGAAACTTATTCGAGACATTAATACTAGTGAGAAGCAGCTGGAAATAGCATTAGCATCAGAGAGAAGGTTAATGTCGGTGAAGA GTAGAATTGGATATGGAGGGGCTGCAGAGCTATCTGCAAAAAAATATTTGTCCAGGAAATGGATAATATTCCTCTGCTTTGGCAGTTTCTTCACTGGGAC GCTCTTCACCAACAGGGTCTGGACGGGGACTGAACCATCGAATTTAGCAATCAAGTCTCGCAATCCAAAGCTTAAAGGTGTCAACCAAAAATCGAACCTC ACTTTATCAGGATCGACTACAGGAATTACCATAGAAACTTTGCATAATGAGATTTCAAGTTTTGAGGAGGACTTAGCGGCTTCAAAAATAAGATCTTTAG TAAATAGAACTCACGATGGTTCAAAGAAAAAATATTTTGTAGTTATTGGTATCAATACAGGCTTCAGCAGTCGAAGCAGAAGAGATACCGTCCGTGCAAC TTGGATGCCGCAAGGCGATAAAAGAAATAGGCTAGAAAAGGAAAAGGGCATTGTCATTCGTTTTGTTATAGGTCACAGTTCTACCTCTGGTGGCATTCTT GACAAAGCCATTGACGTAGAAGACGAAATGCATGGAGATTTCATGAGGCTGGACCACGTTGAGGGCTATTTGCAATTGTCTGCAAAGACTAAGGCTTACT TTTCCACGGCTGCAACTCTTGGATCAATACTAGCAGAACACAATAAGAAAACGAGGGTATATATTGGTTGCATGAAGTCAGGTCCTGTGCTTGCCAAAAA AGGAGTAAAATATCATGAACCTGAATTCTGGAAATTTGGGGAGGTGGGGAACAAATATTTCCGCCATGCTACTGGACAACTTTATGCTATCTCAAAGAAT TTAGCAACCTACATATCTGTTAACCAGCAAGTGTTGCACAAATATGCTAATGAAGATGTTTCACTGGGTACTTGGATTCTTGGTCTGGATGTGGAGCATG TAGATGAAAGGAGGCTTTGTTGTGGCACTCCACCAGATTGTGAGGTAAGGGCTCGGTTGGGGACTACTTGTGCAGTTTCATTTGACTGGAAATGTAGCGG TATTTGCAAATCTGTTGAAAGGATGGCAAAAATTCACAAATTATGTGGCGAAAATAAAGATGCCGTTTGGAGTACTTCCTTTTAG
AA sequence Show only first row Show all	>Lus10001148 pacid=23156343 polypeptide=Lus10001148 locus=Lus10001148.g ID=Lus10001148.BGIv1.0 annot-version=v1.0 MAFLTEKLIRDINTSEKQLEIALASERRLMSVKSRIGYGGAAELSAKKYLSRKWIIFLCFGSFFTGTLFTNRVWTGTEPSNLAIKSRNPKLKGVNQKSNL TLSGSTTGITIETLHNEISSFEEDLAASKIRSLVNRTHDGSKKKYFVVIGINTGFSSRSRRDTVRATWMPQGDKRNRLEKEKGIVIRFVIGHSSTSGGIL DKAIDVEDEMHGDFMRLDHVEGYLQLSAKTKAYFSTAATLGSILAEHNKKTRVYIGCMKSGPVLAKKGVKYHEPEFWKFGEVGNKYFRHATGQLYAISKN LATYISVNQQVLHKYANEDVSLGTWILGLDVEHVDERRLCCGTPPDCEVRARLGTTCAVSFDWKCSGICKSVERMAKIHKLCGENKDAVWSTSF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05170			Galactosyltransferase family p...		Lus10001148 [exp]	0	1
AT1G05170			Galactosyltransferase family p...		Lus10002079 [exp]	1.0	0.9631
AT1G65910	NAC	ANAC028	NAC domain containing protein ...		Lus10010959 [exp]	1.4	0.8716
					Lus10030316 [exp]	3.0	0.8433
AT4G37640		ACA2	calcium ATPase 2 (.1)		Lus10019300 [exp]	3.2	0.8537
AT1G11270			F-box and associated interacti...		Lus10025893 [exp]	3.5	0.8711
AT4G34950			Major facilitator superfamily ...		Lus10010805 [exp]	4.7	0.8311
AT5G61280			Remorin family protein (.1)		Lus10034714 [exp]	5.9	0.8507
AT3G20530			Protein kinase superfamily pro...		Lus10019621 [exp]	9.4	0.8061
AT1G13810			Restriction endonuclease, type...		Lus10033589 [exp]	9.5	0.8234
AT3G44670			Disease resistance protein (TI...		Lus10015465 [exp]	10.1	0.8106

Compare expression of checked genes

Lus10001148 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.