Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G21050 340 / 2e-116 unknown protein AT5G64090 174 / 1e-50 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019547 [exp] 177 / 1e-55 AT5G21050 100 / 1e-26 unknown protein Lus10020420 [exp] 162 / 8e-45 AT5G64090 453 / 6e-154 unknown protein Lus10015829 [exp] 71 / 2e-14 AT5G64090 146 / 6e-42 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G158000 [exp] 380 / 5e-132 AT5G21050 380 / 2e-131 unknown protein Potri.004G195900 [exp] 320 / 1e-108 AT5G21050 326 / 1e-110 unknown protein Potri.001G209800 [exp] 199 / 9e-61 AT5G64090 333 / 4e-111 unknown protein Potri.003G020500 [exp] 189 / 1e-56 AT5G64090 350 / 1e-117 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09790 [flax] [poplar] Hyccin Hyccin
Representative CDS sequence Show only first row Show all	>Lus10001150 pacid=23155724 polypeptide=Lus10001150 locus=Lus10001150.g ID=Lus10001150.BGIv1.0 annot-version=v1.0 ATGGATCGAACCGATGGTTCGGTCGGGTCTTTTAGGGTCGGATTCCATAGTTTAGCAGGAGGCGGTGTAGTGTGCATATGTGATCCATCGCTTTCTGAAT GGGGAATTGAAATCGGAGTTGTGGTCGATGACCTGCGAGCGGAGAAGAACCCAGCCATTTACCTCCTACACAACCCTGACGTCTCAGCCACCATCTCCTC CCTCCTCCGAGATCCCAACTCCGGGTCTGGCGACAACAACCTCTGCCGCTGGCTCTACGACACCTTCCAATCTACCGACCCACAGCTCCAGCTTGTGGTC GTCCGCTTCCTCCCCGTCATCGCCGCCTCATACCTCTCCCGCGTAGCCCTCCGCGGCAAAGCCCTGGCCGGGTTTGAGGCCGTCCTCCTCGCTCTTTACG CCCACGAAACCACCTCCCGCGATGGCCAATCTGTCACCGTCAACATCCCGGACATCTCCCATCCTTCCATCTACCACGAGCCGAAGCTCCCTCCTTCCAA GAACAACATCAACAACGCCACCGTCTTGAACATCGCAGTGATCTCCCCCACACTGGAGCCCCATGGAACTGTGAGGTCCACTCGCAGGGCGAGAATAGTA GGGGTGGCGCTGGAGCTGTTCTACAGCAAGATCTCCCAGATGCCCAAGGACTCCAAGCTGGAGTTCTGCGACTTCTGCGACAACTGGGCCGGGCTACATA AGAAGAAGGAGGGAAATGATGAGGGTGGAGGAGGGAAGAAGATACCTCTACCGTGGGAACTAATGCAGCCAATGTTGAGGATATTAGGCCATTGTATAAT GGGACCGGCCAAAGATTCGCAGCTTTACGAAGCTGCTTGTGGTGCATGCAGGAGTTTGCATTCCAGGTCTCTTCATCAGATGGATGCTAAGTCCATTTTG GCTACGGGAAGTTTGCTTAAGGTTGCAGAGATGGCTACGGATCCTAAGAATAACGTTGATTATACTGAGATTAAGTTTACGGATACCATTACTGTTTGA
AA sequence Show only first row Show all	>Lus10001150 pacid=23155724 polypeptide=Lus10001150 locus=Lus10001150.g ID=Lus10001150.BGIv1.0 annot-version=v1.0 MDRTDGSVGSFRVGFHSLAGGGVVCICDPSLSEWGIEIGVVVDDLRAEKNPAIYLLHNPDVSATISSLLRDPNSGSGDNNLCRWLYDTFQSTDPQLQLVV VRFLPVIAASYLSRVALRGKALAGFEAVLLALYAHETTSRDGQSVTVNIPDISHPSIYHEPKLPPSKNNINNATVLNIAVISPTLEPHGTVRSTRRARIV GVALELFYSKISQMPKDSKLEFCDFCDNWAGLHKKKEGNDEGGGGKKIPLPWELMQPMLRILGHCIMGPAKDSQLYEAACGACRSLHSRSLHQMDAKSIL ATGSLLKVAEMATDPKNNVDYTEIKFTDTITV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G21050			unknown protein		Lus10001150 [exp]	0	1
AT5G07040			RING/U-box superfamily protein...		Lus10005389 [exp]	7.1	0.8592
AT3G29320		PHS1	alpha-glucan phosphorylase 1, ...		Lus10029644 [exp]	9.4	0.8978
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10032254 [exp]	20.8	0.8976
					Lus10032253 [exp]	26.3	0.8956
AT1G79860		ATROPGEF12, ROP...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10025797 [exp]	27.1	0.8234
AT2G44380			Cysteine/Histidine-rich C1 dom...		Lus10003919 [exp]	30.1	0.8905
AT1G06330			Heavy metal transport/detoxifi...		Lus10020704 [exp]	32.5	0.8760
AT2G45570		CYP76C2	"cytochrome P450, family 76, s...		Lus10027426 [exp]	34.4	0.8892
AT3G15395			unknown protein		Lus10038792 [exp]	34.5	0.8665
AT3G61920			unknown protein		Lus10023060 [exp]	40.8	0.8872

Compare expression of checked genes

Lus10001150 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.