Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20950 860 / 0 Glycosyl hydrolase family protein (.1.2) AT5G04885 820 / 0 Glycosyl hydrolase family protein (.1) AT5G20940 793 / 0 Glycosyl hydrolase family protein (.1) AT3G47000 678 / 0 Glycosyl hydrolase family protein (.1) AT3G47010 657 / 0 Glycosyl hydrolase family protein (.1.2) AT3G62710 653 / 0 Glycosyl hydrolase family protein (.1) AT3G47040 645 / 0 Glycosyl hydrolase family protein (.1.2) AT3G47050 642 / 0 Glycosyl hydrolase family protein (.1.2) AT1G02640 137 / 9e-34 ATBXL2, BXL2 beta-xylosidase 2 (.1) AT5G64570 132 / 5e-32 ATBXL4, XYL4 ARABIDOPSIS THALIANA BETA-D-XYLOSIDASE 4, beta-D-xylosidase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013390 [exp] 979 / 0 AT5G20950 935 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10008432 [exp] 966 / 0 AT5G20950 927 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10022413 [exp] 867 / 0 AT5G20950 837 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10013646 [exp] 866 / 0 AT5G20950 941 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10023604 [exp] 865 / 0 AT5G20950 822 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10010657 [exp] 846 / 0 AT5G20950 889 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10033393 [exp] 835 / 0 AT5G04885 964 / 0.0 Glycosyl hydrolase family protein (.1) Lus10005706 [exp] 819 / 0 AT5G04885 863 / 0.0 Glycosyl hydrolase family protein (.1) Lus10010656 [exp] 810 / 0 AT5G20950 897 / 0.0 Glycosyl hydrolase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G153900 [exp] 968 / 0 AT5G20950 937 / 0.0 Glycosyl hydrolase family protein (.1.2) Potri.019G037400 [exp] 922 / 0 AT5G20950 926 / 0.0 Glycosyl hydrolase family protein (.1.2) Potri.013G055600 [exp] 915 / 0 AT5G20950 932 / 0.0 Glycosyl hydrolase family protein (.1.2) Potri.008G013500 [exp] 888 / 0 AT5G04885 966 / 0.0 Glycosyl hydrolase family protein (.1) Potri.008G013700 [exp] 874 / 0 AT5G20950 901 / 0.0 Glycosyl hydrolase family protein (.1.2) Potri.009G042800 [exp] 678 / 0 AT3G47000 934 / 0.0 Glycosyl hydrolase family protein (.1) Potri.005G059200 [exp] 362 / 7e-122 AT5G04885 385 / 8e-131 Glycosyl hydrolase family protein (.1) Potri.009G154701 [exp] 284 / 1e-92 AT5G04885 286 / 6e-94 Glycosyl hydrolase family protein (.1) Potri.009G154802 [exp] 269 / 6e-86 AT5G04885 232 / 5e-72 Glycosyl hydrolase family protein (.1) Potri.009G154032 [exp] 244 / 4e-77 AT5G20940 254 / 7e-82 Glycosyl hydrolase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00933 [flax] [poplar] Glyco_hydro_3 Glycosyl hydrolase family 3 N terminal domain CL0058 [flax] [poplar] PF01915 [flax] [poplar] Glyco_hydro_3_C Glycosyl hydrolase family 3 C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10001151 pacid=23155725 polypeptide=Lus10001151 locus=Lus10001151.g ID=Lus10001151.BGIv1.0 annot-version=v1.0 ATGGGGAGGCGTGATTGGATCCCAGCAATGTGCATAGTCCTGCTACTAGTTCAAATATCCCTGCAGCAATGTGAGTCGAAGCAATACATCAAGTACAAAG ATGCAAAGCAACCGGTCGGGGCTCGAATCAAAGACCTGTTGAAGAGAATGAGCGTGAAAGAAAAGATCGGGCAGATGGTACAGATTGATCTGTTAGTAGC TTCCCCTGCAGTATTGAAAAAGTACATGATTGGGAGTGTGCTCAGTGGTGGAGGGAGTGTTCCATCTGCAAAGGCTTCAGTGGAAGAATGGGTTAATACG GTGAATGGACTGCAGAAGGGAGCTCTCTCAACCAGACTGGGAATCCCTATGATATATGGGATTGATGCAGTTCATGGTCACAACAATGTCTACAATGCCA CCATTTTCCCTCACAATGTGGGACTCGGCGTTACAAGGGATCCCGTGCTCATTAAGCGAATTGGAGAGGCTACTGCCAAGGAAGTTAGAGCAACAGGGAT TTCCTATGTGTTTGCTCCCTGTATTGCTGTATGCAGAGACCCAAGATGGGGAAGGTGCTTCGAAAGCTACAGTGAGGATCCGAGCATTGTTCAAATGATG ACAGAGATTATACCTGGTTTACAAGGAGACATTCCTTCTCATTCCAGAAAGGGTGTTCCCTTTGTTGCCACTGGAGGGAGTAAGGTGGCAGCATGCGCGA AGCACTACTTGGGAGACGGTGGGACAACTAAAGGCATCAATGAGAACAACACAGTTATATCGTGGAAGGGACTTAGGAGCATTCACATGCCAGCATATCT CAACTCTGTTTCCAAAGGTGTGGCCACCATTATGGTGTCCTACACCAGTTGGAATGGAAAGAAGATGCACGCTAATCGCGATCTTATCACTGGATTTCTC AAAAACAAGCTCAACTTCAGGGGTTTTGTGATATCGGATTGGCAAGGAATCGACAGGATTACTTCTCCACCACATACCAATTTTACTTCTTCTATTACAA CAGGAATTACTGCTGGACTTGACATGGTGATGGTTCCCTACAATTACACAGAGTTCATTGATGATTTAACCTATCAAGTGAAGAATAATATAATTCCAAT GAGTAGGATTAATGATGCAGTGCAAAGGATCCTGAGAGTCAAATTCGTGATGGGTATGTTTGAGAAACCACTAGCTGATCTCACTATGGCCAATGAGCTC GGGAAACAGGAGCACAGAGAGCTAGCGAGGGAAGCCGTGAGAAAGTCGCTTGTACTTCTAAAGAATGACGGTGATCATAAGAAGCCATTGTTGCCTCTTA CCAAGAAGGCACCCAAGATTCTTGTAGCTGGAACCCATGCTCACAACTTGGGGAACCAATGTGGAGGTTGGACAATCACATGGCAAGGTGTACCCGGAAA TAATCTCACATCTGGTACCACAATCCTGAAAGCAGTGAAAAGTGCAGTTGATCCCTCTACTCAAGTTGTATACAAGGAGAAACCAAATGCTAATTTCATA AAGTCGAACAACTTCTCCTACGCCATCGTGGTAGTCGGTGAGCCTCCGTATGCAGAAACATTCGGTGACAGCTTAAACCTGACTATACCAGGAGATGGAC TGACCACAATCAACAATGTTTGTGGAGCCGTGAAATGTGTCGTGGTTTTGATCACTGGGCGCCCGGTAGTGATCCAACCACATTACCTTTCCAAGATTGA TGCTCTGGTAGCTGCTTGGCTTCCAGGAAGTGAAGGCCAAGGCGTCACTGACCTCTTGTTTGGGGACTTCGGATTCACGGGAAAGCTTGCGAGGACGTGG TTTAAGTCTGTTGACCAACTTCCTATGAATGTGGGTGATTCACATTATGACCCACTTTTCCCTTTCGGCTTTGGTCTCACCACTCACCCTCTAATTACAT CCTAG
AA sequence Show only first row Show all	>Lus10001151 pacid=23155725 polypeptide=Lus10001151 locus=Lus10001151.g ID=Lus10001151.BGIv1.0 annot-version=v1.0 MGRRDWIPAMCIVLLLVQISLQQCESKQYIKYKDAKQPVGARIKDLLKRMSVKEKIGQMVQIDLLVASPAVLKKYMIGSVLSGGGSVPSAKASVEEWVNT VNGLQKGALSTRLGIPMIYGIDAVHGHNNVYNATIFPHNVGLGVTRDPVLIKRIGEATAKEVRATGISYVFAPCIAVCRDPRWGRCFESYSEDPSIVQMM TEIIPGLQGDIPSHSRKGVPFVATGGSKVAACAKHYLGDGGTTKGINENNTVISWKGLRSIHMPAYLNSVSKGVATIMVSYTSWNGKKMHANRDLITGFL KNKLNFRGFVISDWQGIDRITSPPHTNFTSSITTGITAGLDMVMVPYNYTEFIDDLTYQVKNNIIPMSRINDAVQRILRVKFVMGMFEKPLADLTMANEL GKQEHRELAREAVRKSLVLLKNDGDHKKPLLPLTKKAPKILVAGTHAHNLGNQCGGWTITWQGVPGNNLTSGTTILKAVKSAVDPSTQVVYKEKPNANFI KSNNFSYAIVVVGEPPYAETFGDSLNLTIPGDGLTTINNVCGAVKCVVVLITGRPVVIQPHYLSKIDALVAAWLPGSEGQGVTDLLFGDFGFTGKLARTW FKSVDQLPMNVGDSHYDPLFPFGFGLTTHPLITS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20950			Glycosyl hydrolase family prot...		Lus10001151 [exp]	0	1
AT2G22590			UDP-Glycosyltransferase superf...		Lus10035951 [exp]	1.7	0.9520
AT5G18860		NSH3	nucleoside hydrolase 3, inosin...		Lus10041249 [exp]	2.0	0.9526
AT2G21100			Disease resistance-responsive ...		Lus10027834 [exp]	2.0	0.9462
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Lus10015127 [exp]	3.6	0.9565
AT5G14340	MYB	AtMYB40	myb domain protein 40 (.1)		Lus10014569 [exp]	5.9	0.9313
AT2G16750			Protein kinase protein with ad...		Lus10019787 [exp]	9.2	0.9360
AT1G24430			HXXXD-type acyl-transferase fa...		Lus10025729 [exp]	9.5	0.9198
AT3G07425			unknown protein		Lus10009587 [exp]	11.0	0.9301
AT4G16563			Eukaryotic aspartyl protease f...		Lus10000725 [exp]	16.0	0.9383
AT1G06980			unknown protein		Lus10026407 [exp]	16.2	0.9293

Compare expression of checked genes

Lus10001151 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.