Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20990 900 / 0 B73, CNX1, SIR4, CHL6 SIRTINOL 4, CO-FACTOR FOR NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 1, CO-FACTOR FOR NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE, CHLORATE RESISTANT 6, molybdopterin biosynthesis CNX1 protein / molybdenum cofactor biosynthesis enzyme CNX1 (CNX1) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000717 [exp] 320 / 2e-104 AT5G20990 201 / 4e-59 SIRTINOL 4, CO-FACTOR FOR NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 1, CO-FACTOR FOR NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE, CHLORATE RESISTANT 6, molybdopterin biosynthesis CNX1 protein / molybdenum cofactor biosynthesis enzyme CNX1 (CNX1) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G156400 [exp] 946 / 0 AT5G20990 971 / 0.0 SIRTINOL 4, CO-FACTOR FOR NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 1, CO-FACTOR FOR NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE, CHLORATE RESISTANT 6, molybdopterin biosynthesis CNX1 protein / molybdenum cofactor biosynthesis enzyme CNX1 (CNX1) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00994 [flax] [poplar] MoCF_biosynth Probable molybdopterin binding domain PF03454 [flax] [poplar] MoeA_C MoeA C-terminal region (domain IV) PF03453 [flax] [poplar] MoeA_N MoeA N-terminal region (domain I and II)
Representative CDS sequence Show only first row Show all	>Lus10001152 pacid=23155733 polypeptide=Lus10001152 locus=Lus10001152.g ID=Lus10001152.BGIv1.0 annot-version=v1.0 ATGATGATATCGACGGAGGATGCTCTCCGGATTGTTCTGGAAGCGGCTGAGCGCCTTCCTCCGGCGACGGTACCTCTTCATGATGCTCTCGGGAAAGTCC TCGCCGAGGATATTCGTGCAAAGGACCCTTTGCCTCCTTACCCTGCTTCTATCAAGGATGGCTATGCTGTGATTGCTTCCGATGGTCCAGGGGAATATCC TGTGATTGCCGAGTCTAGAGCTGGAAATGATGCAATTGGAGTGACGCTTACTCCAGGAACTGTTGCATATGTTACAACTGGTGGACCTATTCCAGATGGC GCTGATGCGGTCGTTCAGGTTGAGGACACTGAGATAGTAGATGATGCGTCAGGGGGATTGAAGCGTGTAAAGATACTGGTACAGACTGCAAAGGGCGTTG ATATTCGTCCCGTGGGCTGCGATATAGAGAAAGAAGCCACGGTATTAAGATGTAGAGAAACACTGGGTGCTTCAGAAATTGGCCTACTTGCTACAGTTGG TATATTTCCTACCCCTACAATTGCTGTGGTTTCTACTGGAGATGAACTTGTGGAGCCAACGACTGGGTGTTTGAGCAGAGGTCAGATCAGGGACTCCAAC CGTGCTACCCTACTGGCAGCTGCCGTTCAGCAACGGTGTAAGGTTGTTGACTTGGGAATTGCTAGAGATGATGAAGAAGAACTTGAAAGTGTCCTGGATA AGGCATTTTCTTCTGGGGTGGATATTCTCTTAACGTCAGGAGGTGTTTCGATGGGGGACAAAGATTTTGTGAAGCCCGTGCTTGAAAGAAGAGGGATAAT CCATTTTGATAAGGTTTGCATGAGACCTGGCAAGCCTTTGACTTTTGCTGAGGTCCCGATAAAAACAATTAACCCTGCAACCAGAAAACTTCTTACATTT GGGTTACCCGGAAATCCAGTGAGCTGTCTAGTTTGTTTTCATCTCTTTGTGGTTCCTGCTATTCGCCATCTTGCTGGATGGGAAAATCCTTATCTTTTGA GAGTGCATGCTCGTCTTAATCAGCCAATGAAGACAGATCCAGTACGACCAGAATTTCATCGTGCCATTGTTAAATGGAAGGCCAATGATGGATCAGGGAA TCCAGGCCGACTACTGAGCATGAAATCAGCTAATGTGCTACTGGAGTTGCCAGCAACAGGAACTTTACTGCCGGCTGGCACTTCTGTCTCAGCCCTTGTT ATTACTGATTTAAGCTCTAATGCTTTCTCTGATGACCGTATTCCACCAGAATTGGCATCTTCGATTCAAAGTACAGCTAGTGAGACAGCAGCAGGTTCTG AGGTCAGTGTGGCTATTCTAACTGTGAGTGATACTGTTGCATCTGGTACTGGGCCTGACAGAAGTGGTCCTAGAGCTATTTCAGTTATAAATTCTTCATC AGAAAAGCTAGGAGGAGCTACAGTAGTATTTACAGCTGTTGTCCCAGATGATGTAAGAAAAATTAAGGATGTTCTGCAGAAGTGGTGTGACATTGATAGA GTGGATCTCATTCTGACATTGGGAGGTACTGGCTTCACTCCAAGAGATGTGACTCCTGAGGCAACAAAAGAGTTGATTGAGAAGGAAACGCCCGGCCTTG TGCATGTAATGACACGAGAGAGTTTAAAGGTTACACCATTTGCCATGTTATCAAGGGCAGCAGCTGGTATAAGGGGCACATCACTGATGATCAATATGCC AGGGAACCCGAATGCGGTCGCTGAATGTATGGAAGCTATATTGCCAGTACTGAAGCACGCTCTCAAACAGATCAAAGGGGACAAGCGGGAGAAACATCCA CGTCATCTCCCACACGCACACCAACCGGCTGACACGTGGGAGCGCAGCTTTATGTCGGCTGCTGTTAGAGAGTTAACAGAATCTCCTCCTCCTCCTACTA CTACTACTACTACTGGTGGTGTTGGAGGTGGTGATTGCTCTTGCTCCCACTAA
AA sequence Show only first row Show all	>Lus10001152 pacid=23155733 polypeptide=Lus10001152 locus=Lus10001152.g ID=Lus10001152.BGIv1.0 annot-version=v1.0 MMISTEDALRIVLEAAERLPPATVPLHDALGKVLAEDIRAKDPLPPYPASIKDGYAVIASDGPGEYPVIAESRAGNDAIGVTLTPGTVAYVTTGGPIPDG ADAVVQVEDTEIVDDASGGLKRVKILVQTAKGVDIRPVGCDIEKEATVLRCRETLGASEIGLLATVGIFPTPTIAVVSTGDELVEPTTGCLSRGQIRDSN RATLLAAAVQQRCKVVDLGIARDDEEELESVLDKAFSSGVDILLTSGGVSMGDKDFVKPVLERRGIIHFDKVCMRPGKPLTFAEVPIKTINPATRKLLTF GLPGNPVSCLVCFHLFVVPAIRHLAGWENPYLLRVHARLNQPMKTDPVRPEFHRAIVKWKANDGSGNPGRLLSMKSANVLLELPATGTLLPAGTSVSALV ITDLSSNAFSDDRIPPELASSIQSTASETAAGSEVSVAILTVSDTVASGTGPDRSGPRAISVINSSSEKLGGATVVFTAVVPDDVRKIKDVLQKWCDIDR VDLILTLGGTGFTPRDVTPEATKELIEKETPGLVHVMTRESLKVTPFAMLSRAAAGIRGTSLMINMPGNPNAVAECMEAILPVLKHALKQIKGDKREKHP RHLPHAHQPADTWERSFMSAAVRELTESPPPPTTTTTTGGVGGGDCSCSH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20990		B73, CNX1, SIR4...	SIRTINOL 4, CO-FACTOR FOR NITR...		Lus10001152 [exp]	0	1
AT1G77700			Pathogenesis-related thaumatin...		Lus10028079 [exp]	1.0	0.7386
AT4G24320			Ubiquitin carboxyl-terminal hy...		Lus10027445 [exp]	5.3	0.6743
AT1G42540		ATGLR3.3	glutamate receptor 3.3 (.1)		Lus10013838 [exp]	11.0	0.7023
AT4G19985			Acyl-CoA N-acyltransferases (N...		Lus10003689 [exp]	16.5	0.6530
AT2G17080			Arabidopsis protein of unknown...		Lus10023962 [exp]	19.1	0.7000
AT4G19150			Ankyrin repeat family protein ...		Lus10001414 [exp]	20.6	0.6948
AT1G04280			P-loop containing nucleoside t...		Lus10022217 [exp]	20.8	0.6696
AT4G03140			NAD(P)-binding Rossmann-fold s...		Lus10005927 [exp]	25.9	0.6802
AT4G38900	bZIP	AtbZIP29	Basic-leucine zipper (bZIP) tr...		Lus10018061 [exp]	28.3	0.6708
AT2G02148			unknown protein		Lus10031926 [exp]	31.2	0.6446

Compare expression of checked genes

Lus10001152 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.