Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43070 522 / 0 ATSPPL3 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 3, SIGNAL PEPTIDE PEPTIDASE-LIKE 3 (.1) AT1G05820 508 / 3e-176 ATSPPL5 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 5, SIGNAL PEPTIDE PEPTIDASE-LIKE 5 (.1.2) AT1G63690 412 / 9e-139 ATSPPL2 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (.1.2) AT1G01650 405 / 5e-136 ATSPPL4 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 4, SIGNAL PEPTIDE PEPTIDASE-LIKE 4 (.1.2) AT4G33410 105 / 1e-24 ATSPPL1 SIGNAL PEPTIDE PEPTIDASE-LIKE 1 (.1) AT2G03120 87 / 2e-18 ATSPP signal peptide peptidase (.1) AT2G30290 50 / 3e-06 VSR2, VSR1;2, BP80-1;2, AtVSR2 VACUOLAR SORTING RECEPTOR 1;2, binding protein of 80 kDa 1;2, VACUOLAR SORTING RECEPTOR 2 (.1.2) AT2G14720 48 / 2e-05 VSR4, VSR2;1, MTV4, BP80-2;1, VSR-2 VACUOLAR SORTING RECEPTOR 2;1, binding protein of 80 kDa 2;1, vacuolar sorting receptor 4 (.1.2) AT2G14740 47 / 2e-05 VSR2;2, BP80-2;2, ATVSR3 VACUOLAR SORTING RECEPTOR 3, VACUOLAR SORTING RECEPTOR 2;2, binding protein of 80 kDa 2;2, vaculolar sorting receptor 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019557 [exp] 447 / 9e-156 AT2G43070 245 / 2e-77 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 3, SIGNAL PEPTIDE PEPTIDASE-LIKE 3 (.1) Lus10024653 [exp] 425 / 6e-144 AT1G63690 744 / 0.0 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (.1.2) Lus10031104 [exp] 414 / 1e-139 AT1G63690 872 / 0.0 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (.1.2) Lus10017796 [exp] 400 / 1e-133 AT1G01650 802 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 4, SIGNAL PEPTIDE PEPTIDASE-LIKE 4 (.1.2) Lus10032285 [exp] 395 / 3e-129 AT1G63690 713 / 0.0 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (.1.2) Lus10018834 [exp] 361 / 2e-119 AT1G01650 685 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 4, SIGNAL PEPTIDE PEPTIDASE-LIKE 4 (.1.2) Lus10036364 [exp] 331 / 2e-108 AT1G01650 608 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 4, SIGNAL PEPTIDE PEPTIDASE-LIKE 4 (.1.2) Lus10014769 [exp] 319 / 1e-98 AT4G00370 662 / 0.0 anion transporter 2, Major facilitator superfamily protein (.1) Lus10035484 [exp] 189 / 8e-55 AT1G63690 364 / 3e-122 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G232200 [exp] 597 / 0 AT2G43070 626 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 3, SIGNAL PEPTIDE PEPTIDASE-LIKE 3 (.1) Potri.014G150000 [exp] 588 / 0 AT2G43070 570 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 3, SIGNAL PEPTIDE PEPTIDASE-LIKE 3 (.1) Potri.003G128500 [exp] 433 / 4e-147 AT1G63690 857 / 0.0 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (.1.2) Potri.002G160500 [exp] 429 / 3e-145 AT1G01650 838 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 4, SIGNAL PEPTIDE PEPTIDASE-LIKE 4 (.1.2) Potri.014G085300 [exp] 422 / 6e-143 AT1G01650 810 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 4, SIGNAL PEPTIDE PEPTIDASE-LIKE 4 (.1.2) Potri.001G103100 [exp] 422 / 9e-143 AT1G63690 829 / 0.0 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (.1.2) Potri.015G145600 [exp] 106 / 8e-25 AT4G33410 614 / 0.0 SIGNAL PEPTIDE PEPTIDASE-LIKE 1 (.1) Potri.012G142400 [exp] 104 / 3e-24 AT4G33410 633 / 0.0 SIGNAL PEPTIDE PEPTIDASE-LIKE 1 (.1) Potri.001G276700 [exp] 92 / 6e-20 AT2G03120 550 / 0.0 signal peptide peptidase (.1) Potri.009G071600 [exp] 90 / 1e-19 AT2G03120 542 / 0.0 signal peptide peptidase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0130 [flax] [poplar] Peptidase_AD PF04258 [flax] [poplar] Peptidase_A22B Signal peptide peptidase CL0364 [flax] [poplar] Leu-IlvD PF02225 [flax] [poplar] PA PA domain
Representative CDS sequence Show only first row Show all	>Lus10001154 pacid=23155728 polypeptide=Lus10001154 locus=Lus10001154.g ID=Lus10001154.BGIv1.0 annot-version=v1.0 ATGGCAATTTCATTTTCGAGCAGTAAAATCAGTTTGTGTATATTCTTCTGGTTTTCCATTTTTGTTGCTTGCTTTGGAGCCGACCCTACCGTTAACAATG CCAACACTCCTCCTGGTTGTAACAATCCTTATAAATTGGTGAAGGTTGAAAATTGGGTTAATGGCGTTGAAGGTGAAACTTACAGTGGGGTGACTGCAAG ATTCGGTGCAGTGCTACCTTCGGAGAATGATAAAAGTGTGAAATTATCAGCTCTTGTCTCAAATCCATTGACATGTTGTTCGAAACCTTCTTCAAAGTTG TCCAACTCTTTTGTGATCTCGGCACGAGGAGATTGTTCCTTCAATACGAAAGCAAATATTGCACAAGCAAATGGTGCAAAAGGGCTGTTAGTGATAAATG AAGAAGAAGGATTTCTGGAGATGGGTTGCGATGAAGATACTTCAGCTACAAATATAACGATTCCTGTAGTGCTGGTACCAAAGTCAACGGGTGAAAGTTT CAAGAAGTCAATACTGGATGGGAAGAAATTGGAAGTTGGAGCGTATGCACCGAATCGTCCAGTGGTGGACATATCGGTTATATTCTTATGGTTGATGGCT ACATCAACAGTTGCCGCAGCATCACTTTGGCAAGAGCTTAATGACAATAACCAGACGACGACGACGACGACGACTACTTATGATGCTGACTTCTCTCCAA AGAGTAATGGTGAAAACGGGTCAACAAGGAACGATGGGAAGGAGGAAGAAATAATAAATATTGATGTGAAAAGTGCAATTATGTTTGTGATAAGCGCATC TACTTTTCTGGTTCTACTCTTCTTCTTTATGTCCACTTGGTTCGTCTGGCTCCTCATCGTACTCTTCTGCATCGGAGGTGTTGAGGTATACATCTTACTC ATTCAATTCAATGTGTTTTGCAGCTGTACCCAGAAGAAAGTAACTTTACCCTATTTTGGTGAAACCACCCTGCTTTCTCTGGCTGTCCTTTTATTTTGTT TAGCATTTGCTGTTTTTTGGGCTATTACTCGGAGGGAATCTTACTCTTGGATTGGACAAGATATTCTTGGTATTTCCTTAATGATAACAATTTTGCAAAC GGCCAGGTTGCCTAATATTAAGGTTGCGACAGTACTTCTTTGTTGTGCATTTGTGTATGACATCTTTTGGGTGTTCCTATCACCAATAATATTCCACCAG AGTGTAATGATCGCGGTCGCAAAAGGAAACAATAGCGGTGGAGAATCAATCCCAATGCTTTTGAGATTCCCTCGATTAACTGATCCTTGGGGTGGTTATG ATATGATTGGATTTGGTGACATCCTTTTCCCCGGTTTGTTGGTTTCATTTTCTTTAAGATTCGACAAAGCGTACAAAAAAAGCAGGATAAATGGATACTT TCTTTGGTTAATGGTTGGCTATGCAACTGGTCTTTTCTTGACGTACCTTGGCTTATATTTAATGAACGGTCATGGCCAACCAGCGTTGCTCTATTTGGTC CCTTGCACACTAGGTGTTTGTGTGGTGTTGGGCCTAATAAGAGGGGAATTGAAAGATTTGTGGAGTTACAATCCAGCCGCTACCTCACGAGTTGCGGACG GCGATGCTTAA
AA sequence Show only first row Show all	>Lus10001154 pacid=23155728 polypeptide=Lus10001154 locus=Lus10001154.g ID=Lus10001154.BGIv1.0 annot-version=v1.0 MAISFSSSKISLCIFFWFSIFVACFGADPTVNNANTPPGCNNPYKLVKVENWVNGVEGETYSGVTARFGAVLPSENDKSVKLSALVSNPLTCCSKPSSKL SNSFVISARGDCSFNTKANIAQANGAKGLLVINEEEGFLEMGCDEDTSATNITIPVVLVPKSTGESFKKSILDGKKLEVGAYAPNRPVVDISVIFLWLMA TSTVAAASLWQELNDNNQTTTTTTTTYDADFSPKSNGENGSTRNDGKEEEIINIDVKSAIMFVISASTFLVLLFFFMSTWFVWLLIVLFCIGGVEVYILL IQFNVFCSCTQKKVTLPYFGETTLLSLAVLLFCLAFAVFWAITRRESYSWIGQDILGISLMITILQTARLPNIKVATVLLCCAFVYDIFWVFLSPIIFHQ SVMIAVAKGNNSGGESIPMLLRFPRLTDPWGGYDMIGFGDILFPGLLVSFSLRFDKAYKKSRINGYFLWLMVGYATGLFLTYLGLYLMNGHGQPALLYLV PCTLGVCVVLGLIRGELKDLWSYNPAATSRVADGDA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05820		ATSPPL5	ARABIDOPSIS THALIANA SIGNAL PE...		Lus10001154 [exp]	0	1
AT2G36780			UDP-Glycosyltransferase superf...		Lus10014438 [exp]	1.0	0.8359
AT2G46660		CYP78A6	"cytochrome P450, family 78, s...		Lus10005995 [exp]	8.1	0.7600
AT1G11040			HSP40/DnaJ peptide-binding pro...		Lus10018152 [exp]	8.5	0.7076
AT3G27030			unknown protein		Lus10041550 [exp]	13.7	0.7333
AT5G66200		ARO2	armadillo repeat only 2 (.1)		Lus10037086 [exp]	16.8	0.7276
AT4G37440			unknown protein		Lus10019305 [exp]	16.9	0.6960
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10002176 [exp]	17.3	0.7576
					Lus10021106 [exp]	19.1	0.6835
AT2G13680		GLS2, ATGSL02, ...	ARABIDOPSIS THALIANA GLUCAN SY...		Lus10033482 [exp]	24.3	0.6378
AT5G41850			alpha/beta-Hydrolases superfam...		Lus10023100 [exp]	30.2	0.7289

Compare expression of checked genes

Lus10001154 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.